barSeed - Barley Seed Development Database

Probe CUST_25871_PI390587928

Source Contig U35_24571

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25871_PI390587928	Hv_44K_v2	TGTGGCATCTTTAACTGTATGAATGGTGTTTTGTCCTTTGCAAACTGTACTGCTGGTAAA	518	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.894	1.393	1.587	1.135	0.450	0.694
Raw	218.827	518.041	524.155	596.860	81.025	136.640

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63062.2	3462	6e-24	3300 - 3358	100	59 / 59	plus	ABC39346
MLOC	MLOC_63062.1	3597	7e-23	3541 - 3597	100	57 / 57	plus	ABC39346
JLOC1	JLOC1_41299.2	3490	3e-24	3288 - 3346	100	59 / 59	plus
JLOC1	JLOC1_41299.1	3548	3e-24	3346 - 3404	100	59 / 59	plus
Harvest35	U35_24571	592	3e-25	519 - 578	100	60 / 60	plus

Contig Sequence (592 bp)

>U35_24571 592 Hv_44K_v2
TGAAGTATTAAGTGTGAAGTGCGCATACTACTTCAGTGCTGGTTACAGCTCATGGTTTAC
GGGGATGGCAGTTCTGCAGAAGCTCTCACCGGAAGAAATCTACCAAGAGATGACTAGTCT
GAAGGTTGCTGAGGAGTGGATGGTGGATGAACTCGTGTACAAAGAAATGAGTGGTCCTCT
CGGGAGCTGGGTCGACTTCAAGACAGAGTCACATGAAGCTGCAAAAGACATAACAGCAGA
GTTGCTAGAATCCTTGGTTGATGAAATGGTTGCTGACCTTCTATATTGGTAGTTTGGTCA
TGCAATTATTGTGCATTTTTCTTGTCAAGAACTACAACCGGGGCACTAACCTGCTCGCTA
TGTGATGATAGATCAACGGCTGCCAGGTCCATTCTTTACCTTTTTTGGGGACCAATTGGG
TTGTCATGATGCAGAAAATAGCAAGGCATTGTAATTTTTTTCTTTCCTTATGATGGTCCA
TTGTTAATGAAAGTAGCTGGTATCTGTATGTTGTACAATGTGGCATCTTTAACTGTATGA
ATGGTGTTTTGTCCTTTGCAAACTGTACTGCTGGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_24571 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g02980.1	871	1e-51
Arabidopsis v10	None