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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_25866_PI390587928Hv_44K_v2ATAATTTGCTGTAAAGCCATCCGAATCCAGTAGTGTTTTTCTGCAACTTCCATTTCATTT635GeneList: brown
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.8132.1211.1420.7660.2860.306
Raw 521.018978.095450.651480.25561.50073.077



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_6853.247042e-244601 - 466010060 / 60plus None
MLOCMLOC_6853.346112e-244540 - 459910060 / 60plus None
MLOCMLOC_6853.148112e-244637 - 469610060 / 60plus None
JLOC1JLOC1_4489.247308e-254625 - 468410060 / 60plus
JLOC1JLOC1_4489.147348e-254629 - 468810060 / 60plus
Harvest35U35_245787493e-25636 - 69510060 / 60plus



Contig Sequence (749 bp)

>U35_24578 749 Hv_44K_v2
GATCCGTCACGACATCCCGTGCGTCAGCGCCGACTATCTGGTCGAGTACGTCTGCAAGCC
TGGTTACCCCCTGGACACGCACGTCCTCTTCAAGACGAGCCGTCTGGCCACCAAGTCCCT
GGACAAGCTGCTGAAGAGTCAGCAGGAGGTGGCCATGGATAACCTGGAAGCATCCGAGGA
CGATGGTGACGATGACCTGAGCTGTGCAGCCTGCGGGAGCACAGACCGGGCGGAGGTGAT
GCTGATCTGTGGCAGCGAGGATGGCACGGTCGGCTGCGGGGTTGGCATGCACATCGACTG
CTGCGACCCGCCCCTGGACCACGTCCCTGACGATGACTGGCTGTGCCCCAAGTGCGAGGC
GCCCAAGGCCAAGAAGAAACCCCCTAGGGGCGCGGCGAGCAAGTCGAGAGGATCATCCAA
GCAGCGGAGGTGATTCTGGTTCTCTCGTCTTCTGTACTAGACTCCCTGTTTTATCGAACA
CAGACAGAAGAAATAGTAGTGTATAACAGCGCCAGTGTAATATAAAGCTGTGATGTCGAC
AGAAATGCCGCCTCAGCATTTCTCTTGTAATAGTTGTTCCTTTTCCATCCACGGCTGTTT
TCACTTGGTTTCATCAGTGTGCAGTGATAGTGATTATAATTTGCTGTAAAGCCATCCGAA
TCCAGTAGTGTTTTTCTGCAACTTCCATTTCATTTTTTTTGAGTCACTGAATGACAGTTC
AAGTTTCGTTGTAAAAAAAAAAAAAAAAA



Homology of Contig U35_24578 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os03g19190.114633e-53protein|TOPBP1C - Similar to DNA replication protein TOPBP1 from, expressed
Brachypodium v1_2None
Arabidopsis v10None