barSeed - Barley Seed Development Database

Probe CUST_25865_PI390587928

Source Contig U35_50841

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25865_PI390587928	Hv_44K_v2	CAAGGGATGTAATACTCGTTCTTGCATATGGAGGTGGGAAAGAAGGGTTACCTCAAAAAA	11	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.073	0.183	0.969	1.557	0.995	1.298
Raw	4.450	20.854	96.728	239.894	55.543	79.056

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_50841	642	3e-25	12 - 71	100	60 / 60	minus

Contig Sequence (642 bp)

>U35_50841 642 Hv_44K_v2
TTTTTTTTTTTTTTTTTGAGGTAACCCTTCTTTCCCACCTCCATATGCAAGAACGAGTAT
TACATCCCTTGTTAGCCTCTACTAAAATAATCTGGGGTATGTTGCTGTTAGTTTACTAAA
AGTTGCAGTATTTGGTTTATCTCAATCATCCTAAAAAATGTCTACCTATTTCCATGTCGC
ATGCAGCGAAAAGGGTTGAAATATCCCCAATCCCCACCGCTTCAAAGTAATTCCATGTCG
CTAAATCCTTTGGGTTTTTTTGCACAAGCACCCTGGGAGAGGATTTGCATAAAAATACTC
CTCTTGCCTTGGACTTTGACCAAACAGCCTCTGATATGGACCTCCAAGTCTGTTTTCATG
ATGGGTTTTCACTTTGTTTTGGAAGTCCTTCCAAGTTATTGTACCCTCATCAAGCTTGTC
AATGAGCTCAACAAGCTTTTGCCTGTCAGGATTAATGGGTGTCCGGAATCCTTCAAATCT
TCTATGACCCTGGACTGGTTTGGCCATATTTCCATCATATGTATACACAAAAACATCACT
CTGGAGGGCTACATTGTAGTCCACTGCAGCTAATCTGTTTTGGTACAGCTTGAGGGGCTC
TAATTCATCTGCTGGTGCTAAACTATAATGGGTGCCTCGTGC

Homology of Contig U35_50841 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g63230.1	575	2e-73	protein\|growth regulator related protein, putative, expressed
Brachypodium v1_2	Bradi2g23650.1	598	2e-70
Arabidopsis v10	AT2G37980.1	638	1e-51	O-fucosyltransferase family protein \| chr2:15894162-15897452 REVERSE LENGTH=638