- Probe CUST_25860_PI390587928
- Source Contig U35_36552
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_25860_PI390587928 | Hv_44K_v2 | TTTTTTAAAGCCCCTTCAGCTCCCGTATTACGGAGCGGGCAATGTGTTTCATGTGTCGTG | 80 | GeneList: darkmagenta MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 7.904 | 3.914 | 1.174 | 0.849 | 0.264 | 0.339 |
| Raw | 1094.068 | 903.133 | 230.033 | 284.067 | 27.933 | 40.422 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC31641 | 190 | 3e-25 | 81 - 140 | 100 | 60 / 60 | minus | ABC31641 |
| Harvest35 | U35_36552 | 190 | 3e-25 | 81 - 140 | 100 | 60 / 60 | minus |
Contig Sequence (190 bp)
>U35_36552 190 Hv_44K_v2 TTTTTTTTTTTTTTTTTGGACCCACACACAAACAATAAAGCACTTGAGTTTGGGTCCTCA TCCCAACCTGAAACATAAAACACGACACATGAAACACATTGCCCGCTCCGTAATACGGGA GCTGAAGGGGCTTTAAAAAAACGCCGGGCCCACCGGTGGCTTCTTCTTACCCTGGGAAAG GAACGGGGCC
Homology of Contig U35_36552 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |