- Probe CUST_25853_PI390587928
- Source Contig U35_36557
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_25853_PI390587928 | Hv_44K_v2 | ACCTGCATAGGAAACTCCGGAGATCTTGATGAATCCGTAGCTGCTGCAATTACCGATAAT | 399 | GeneList: cyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.806 | 1.283 | 1.235 | 0.616 | 0.476 | 0.405 |
| Raw | 146.690 | 145.545 | 135.824 | 101.756 | 28.637 | 26.902 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_36344.2 | 3168 | 7e-23 | 1650 - 1709 | 98 | 59 / 60 | plus | ABC03351 |
| MLOC | MLOC_36344.1 | 3089 | 7e-23 | 1576 - 1635 | 98 | 59 / 60 | plus | ABC03351 |
| JLOC1 | JLOC1_23385.1 | 3201 | 4e-23 | 1576 - 1635 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC31656 | 582 | 3e-25 | 400 - 459 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC03352 | 3124 | 1e-23 | 1633 - 1692 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_36557 | 582 | 3e-25 | 400 - 459 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_15479 | 3145 | 1e-23 | 1633 - 1692 | 98 | 59 / 60 | plus |
Contig Sequence (582 bp)
>U35_36557 582 Hv_44K_v2 TGANGTGNAACCATNTCTGTCTGGACCAAAACGGCCTCATGATAGAGTGACATTGAAGAA CATGAAGTCAGATTGGCTTTCTTGCCTGGACAACAAAGTAGGGTTCAAGGGTTTTGCTGT CCCCAAGGAATCACAGGGTAAAGTTGCTGAGTTTTCGTTCCGTTGGTGTCAGCAAAGATA AAGCATGGTGATGTTGTAATTGCGGGGGGGGGCAGTTGCACCAACACATCAAATCCTAAT GTAATGCTGGGAGCTGCGTTGGTTGCCAAAAAGGCTTGTGACCTANGCCTGGAGGTGAAA CCATGGATTAAGACAAGCCTTGCGCCAGGTTCTGGTGTTGTGAAGAAGTACTTGNTTAAG ATACTTCTGCAGACCACTCTTGTTGGCTATGGTTGTACAACCTGCATAGGAAACTCCGGA GATCTTGATGAATCCGTAGCTGCTGCAATTACCGATAATGATGTTGTCGCTGCTGCTGTG TTGTCTGGTAACAGGAATTTTGAAGGCCGTGTACATGCATTGACCCGAGCAAATTATCTC GCATCTCCCCCATTGGTTGTGGCCTATGCACTTGCTGGCACG
Homology of Contig U35_36557 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g04410.1 | 987 | 2e-86 | protein|aconitate hydratase protein, putative, expressed |
| Brachypodium v1_2 | Bradi1g75960.1 | 995 | 2e-87 | |
| Arabidopsis v10 | AT4G35830.1 | 898 | 7e-79 | | Symbols: ACO1 | aconitase 1 | chr4:16973007-16977949 REVERSE LENGTH=898 |