barSeed - Barley Seed Development Database

Probe CUST_25845_PI390587928

Source Contig U35_17700

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25845_PI390587928	Hv_44K_v2	AAGGTTTGCACAATGAAGTGTCCCAGATTTTGAATGGCTACAAGCAGATGTTCGGAGCTG	1488	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362026	3555	2e-24	2800 - 2859	100	60 / 60	plus	ABC08447
MLOC	MLOC_11621.2	2307	2e-24	702 - 761	100	60 / 60	minus	ABC08447
MLOC	MLOC_11621.3	2309	2e-24	702 - 761	100	60 / 60	minus	ABC08447
MLOC	MLOC_11621.1	2235	2e-24	714 - 773	100	60 / 60	minus	ABC08447
JLOC1	JLOC1_7717.1	2378	8e-25	1556 - 1615	100	60 / 60	plus
Harvest21	ABC08447	2245	3e-25	1489 - 1548	100	60 / 60	plus	ABC08447
Harvest35	U35_17700	2265	3e-25	1489 - 1548	100	60 / 60	plus

Contig Sequence (2265 bp)

>U35_17700 2265 Hv_44K_v2
GAGAAGATGATGATGATGATGATGCTGTAAATGCTTGGAACTTGAGGAAATGCAACGCTG
CTGGGTTGGATGTCCTTTCTAATGTTTTTGGGGACGACATTCTTCCTACTTTAATGCCTT
TGATTCAGCAAAATTTGGCCCGGACAGATGATGAGTCTTGGAAGGAGCGGGAAGCTGCTG
TTTTATCGATTGGTGCTATAGCAGAGGGATGCATCACTGGGTTATATCCCCATCTTCCAC
AGATGGTTGCCTTCCTAATCCCACTTCTTGATGATAAGTTTCCTCTTATTCGGAGTATTA
CTTGTTGGACCCTCTCCCGATACAGCAAGTTCATTGTTCAGAGCCTTGGCCATCCAAATG
GTCGCGAGCAATTTGATAAGATCCTTATGGGTTTGCTTAGAAGGATATTGGATACTAACA
AAAGAGTGCAGGAGGCTGCCTGTTCTGCATTTGCAACGCTTGAAGAGGAGGCTGCAGAAG
AACTAGTACCGCGACTGGAAGTCATTTTGCAGCACCTTATGTGTGCATATGGAAAATACC
AGAGGCGAAACCTTAGGATACTCTATGACGCTCTTGGCACCCTTGCTGATGCTGTTGGAG
CAGAGCTAAACCAGGCAAAATATCTTGATATATTTATGCCACCATTAATCGCGAAGTGGC
AGCAACTTCCCAACTCTGACAAGGATCTATTTCCACTGCTTGAATGCTTTACATCCATTG
CACAGGCACTGGGACCAGGATTTTCTCAGTTTGCTGAGCCAGTGTTTGTGAGGTGCATCA
GCCTTATCCAAACCCAGCAGTTGGCAAAGGTTGATCCTGCTGCAGCAGGTGCGTTGTATG
ATAAGGAGTTCATTGTCTGTGCATTGGACCTATTGTCTGGACTTACAGAAGGACTTGGCA
GTGGTATCGAAAGTCTGGTTGCGCAAAGCAACTTGAGAGATCTACTTCTGCAATGCTGCG
TGGATGAGGCACCGGATGTTCGACAAAGTGCTCTGGCCCTTCTCGGTGACTTTGCTAGGG
TCTGCCCTATACATCTTCATCCACGCCTCCAAGAATTCCTTACTGCTGCAGCAAAGCAAT
TGACTCCGCAATCTGTGAAGGATGCTGTGTCAGTTGCTAACAATGCTTGTTGGGCCATTG
GAGAATTAGCAATCAAGATTGGCAAGGAAATTTCACCTGTGGTGATCAGTGTTGTTTCAT
GCTTGGTTCCTATTCTAACAACCCCAGAGAGCTTGAACAAGTCACTCATTGAAAATAGTG
CGATCACTCTCGGGAGGCTGTCATGGGTCTGCCCAGACATTGTGGCCCCTCATATGGAGC
ATTTCATGCCAGCCTGGTGCAATGCCTTGTGCATGATAAGAGATGATTTCGAGAAAGAGG
ATGCGTTCCATGGTCTGTGCGCAATGGTGGCAGCAAACCCCACAGGGGCTGTGAGCTCAC
TAGTCCACGTATGCCAGGCCTGTGCAAGTTGGAATGAGATCAAAAGCGAAGGTTTGCACA
ATGAAGTGTCCCAGATTTTGAATGGCTACAAGCAGATGTTCGGAGCTGCCGGCTGGGAAC
AGTGCATGTCCACCCTGGAACCGGCAGTGGTGCAGAGATTAGCGAGATACGGGGTCTGAT
GGTGCCGACAGATCCTCGTCACAGTTTCTCGCTATACCACCACCACCACCACCAACGGAG
CTGAACATCAGAAAAGGAGGGAAGGGCATGAGATTGGGCAAAGTCGTCGGTCCGTCAGGT
GTCCAGGGCGTAGCACATTGTGTGGTTTCCTATATGATGATGATGCGATTGATTGGTTGA
TTCTGCCTGCCTGGGTTGGCTGGTGTTGTATGCTGTCCTCTGGTTGTATACAGGTCTGCT
CAAAAGTGTAGCGTGACTGAGTCGAGGAATTGAATTGCGACGGGAGGACGTCTGCTTTTG
TCGAGTCGGAAAAGGCGGTGTGGTTGTGCGTCTTGTAGGTTATAGGAGGACTTGGGTTTG
GTCTGTCTGTCGAGTCAAAATTTGTATTGGCTGGTTCCAGTGGGGGCTTTTTTGGGGTTT
TGGTGTCGCGCTCCATTGGCAACCCCAGCAGCAACATTCAAAGAGTTCTTTTGTAGCATG
TATTCTATTCTATTCTATGTGAGAGAAAAAGAGAGAGAGAGAGAGAGAGTTTAGGTCTAG
GGTTTGCTTTTGTAATCCTTAATTAATAGGAAGGGCGTCCTTGTATTGATTCGTTCCCAA
CAATAAAAAAAGAGATTGGTGCAGCGAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_17700 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g59494.4	892	protein\|transportin-2, putative, expressed
Brachypodium v1_2	Bradi5g27500.1	895
Arabidopsis v10	AT2G16950.1	895	\| Symbols: TRN1, ATTRN1 \| transportin 1 \| chr2:7353939-7360637 FORWARD LENGTH=895