barSeed - Barley Seed Development Database

Probe CUST_25832_PI390587928

Source Contig U35_17713

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25832_PI390587928	Hv_44K_v2	GTTTTAACGGTCTGTGTATTGTTTGCACTATCCTTTTGACCGTCAAGTTCTTTAATAAAG	1847	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.178	1.928	1.551	0.943	0.342	0.275
Raw	163.356	416.705	290.090	263.729	34.554	30.625

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_14570.1	993	8e-25	854 - 913	100	60 / 60	plus
Harvest21	ABC08430	1934	3e-25	1848 - 1907	100	60 / 60	plus	ABC08430
Harvest35	U35_17713	1934	3e-25	1848 - 1907	100	60 / 60	plus

Contig Sequence (1934 bp)

>U35_17713 1934 Hv_44K_v2
GCACCAGCAGAGTGGACGAGGCAAGGTACTAAACATGTCAAGATTGCTTGCAGGGGGAGA
GATGCTGTACCAGAAAATGAAGCTGTTAACACGTTTGTGTACGAGGTGTTGGCATTTCAT
GAGCGCCAGAAGCCATCAAGGAATCCCAAATACGTACTTGTTCACTGTACTCATGGGCAT
AACCGTACTGGCTTTATGATTGTTCATTATCTAATGCGCACACAACTGTCTAGTGTTACT
GAGGCGTTAAATATATTTGCTCAAAGACGACCTCCAGGAATATATAAAACCGACTACATT
CAAGCACTGTATTCGTTTTATCATGAAGTTCCTGAAAGTATCACATGTCCACCAACACCA
GAATGGAAGAGGCCTTCTGATCTTGATTTGAATGGTGAAGCAAAGCAGGATGACGATGAC
GACAATGGCGAGCCTGCACCGTCACCAGAACCTGCAGATGATAAGGCCATTACTAATGAC
GATGTTCTAGGGGATGCTGTACCTTTTGACCAGCAAGATATCTTGCGTGGCATATGTTTC
AAGTTGCTTGATTTTGTGCCCAATGGTAGAGCTAATGCTCAATTTCCAGGATCTCATCCA
GTTTCCCTTAACAGCGAGAACCTGCAACTTCTGAGACAAAGATATTATTATGCTACGTGG
AAAGCTGATGGAACACGATACATGATGCTTATAATGCGGGATGGCTGTTTCTTAATAGAC
CGAAACTTCTGCTTTAGAAGAGTTCAGATGCGTTTTCCTATTAGGAATGTTAATGATGGT
TTCCACAACTTTACGTTGATCGATGGAGAAATGGTTGTAGACACCATACCTGGTGGTGCA
TTGAAGCGGAGGTACTTAGCGTATGATCTAATGGCAATTAATTTCTCCTCCAAAGTCAAG
TTGCCCTTTTCTGACAGGTGGAAGCTACTTGAGGATGAAATAATTCGTCCACGCATCTAT
GAGAGAAAACAGTTTGAAACTGGTCTTAAAGGCAATCCATCATACAGATATGACCTGGAA
CTTTTTTCGGTAAGGAGAAAGGATTTTTGGCTGCTTTCAACCGTGAAGAAATTGCTCAAG
GAGTTTATTCCAGCACTTTCACATGAATCTGATGGACTTATATTTCAGGGCTGGGATGAT
CCATACGTGAATCGTACCCATGAAGGTCTTTTAAAATGGAAGTACCCAGAGATGAATTCA
GTTGACTTTTTGTTTGAGACTGGTAGTGAAAACCGTCAGCTGGTTTTTCTGTACGAGAGA
GGCAAAAAGAAACTTATGGATGGTACCCGAATTGTATTTCCTGAGGATGTAGAGCAGTCT
TCGGTCTCAGGGAAAATTGTTGAATGCTCTTGGAATAAACAGGAGGACTGCTGGTTCTGC
ATGCGCATCCGAGCAGATAAATCAACTCCTAATGATATCAATACTTACAGAAAGGTGATG
AGGAGCATCACGGATAATATTACTGAAGACAAGCTCCTGGCCGAGATGAATGAAATCAGT
AGCCTTCCGATGTATGCCGATAGGAAAGCTCATGCTGACAGGAAGGCCCATGCCGAGAAG
ATGGCTCACCAGCACAGAAGGAGGTGATGAGGCGAATAATCTTGGTCTTCTAAACTAGAA
TCAACAATGCCGGCTGGTCTCTGTAGCCTGTGTATTTAGCAATAATCAATTTTTGATTTC
AATTGAACAACAGCCGTCACTACACAAGTTTTTCAAAGCTTTCTTATATTGGCCATGCTG
ATTGTATATGTATCGTTCCAGAGTCGTGTATATGTTTTATTATGTGTCCTCAATGCTTGA
TATCATTATCATTTGGCCTGTGCTTTGAAATAGCTTTATCAGCACTAGTTTTAACGGTCT
GTGTATTGTTTGCACTATCCTTTTGACCGTCAAGTTCTTTAATAAAGTTAAAAACACAAA
AAAAAAAAAAAAAA

Homology of Contig U35_17713 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os12g09120.1	666	protein\|mRNA-capping enzyme, putative, expressed
Brachypodium v1_2	Bradi4g40600.1	679
Arabidopsis v10	AT3G09100.2	672	mRNA capping enzyme family protein \| chr3:2788435-2792913 REVERSE LENGTH=672