barSeed - Barley Seed Development Database

Probe CUST_25823_PI390587928

Source Contig U35_17722

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25823_PI390587928	Hv_44K_v2	ACGGGATGTAATAACATCTACAGCCGGACTTAATAAATATGACCCTTATACCCTAAAAAA	1270	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.414	5.201	1.269	0.795	0.388	0.651
Raw	213.444	334.450	68.140	68.847	11.325	20.965

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC07827	1341	3e-25	1271 - 1330	100	60 / 60	plus	ABC07827
Harvest35	U35_17722	1342	3e-25	1271 - 1330	100	60 / 60	plus

Contig Sequence (1342 bp)

>U35_17722 1342 Hv_44K_v2
CGGCACGAGGCTTTATCAGCCAGTGTGCCAATCGGCCAGACCAGAGCAGGGCAGAGCAGC
CTCCCTCGATCGCGTCGCCAGATCGATCGGGCATCGGCCGGCGATGTCGGCGGGCGAGGG
GAGGAAGACGGCGTGCGTCACGGGAGGGAGCGGCTACATCGCTTCGGCGCTCATCAAGCT
GCTGCTCGAGAAGGGCTACGCCGTCAAGACCACCGTCAGAAACCCCGATGACATGGAGAA
GAACTCCCACCTCAAAGACCTGCAGCAAACGCTTGGGCCCTTGGAGATCATCCGTGCCGA
TCTGAATGAAGAAGGCAGCTTCGACGAAGCTGTTTCTGGCTGCGACTACGTCTTCCTCGT
TGCCGCTCCGGTGAACATGTTGTCTGAAGATCCTGAGAGAGATGTGATCGAACCCGCTGT
GCAAGGAACGCTCAACGTGATGAGGTCGTGCGCGAGAGCAGGCACGGTGAAGCGCGTGAT
CCTGACGTCGTCGAACGCCGGGGTGTCCAGGAGGCCGCTGCAGGGCGGCGGCCACGTGCT
GGACGAGAGCTCCTGGTCCGACGTCGAGTATCTCAGAGCCAACAAGCCACCAACTTGGGC
ATACGGGGTGTCGAAGGTGCTTCTGGAGAAGGCGGCGAGCGAATTCGCGGAGGAGAAGGG
CATCAGCCTCGTCACCGTGTTGCCCGTGACCACACTGGGCGCGGCGCCGGTCGCCAAAGC
AAGATCCAGCGTTCCCGTCGTCCTCTCCTTGTTGTCTGGCGACGAAGCGCGGCTGACAAT
CCTGAAAGGCGTGCAGTCTGTCACCGGTTCCGTGTCGATAATTCACGTGGAGGATCTCTG
CCGCGCCGAGGTGTTCGTCGCGGAGAACGAGACCTCGTCGGGGAGGTACATGTGCTGCAG
CCACAACTCCACCGTCGTGCAGATCACCCGTCTTCTGGCGGAAAAATTCCCGCAGTACAA
CGTGAATGCCCAACGATTCGCTGGATGCCCCGAGGAACCGAGAGTGCGCATGTCGTCTCA
GAAGCTCGTCGGAGAAGGGTTTGTCTTCAAGCATGAGTGCCTTGGTGAGATATTCGATGA
CGTTGTCGAGTATGGAAGGAGCACCGGGATTTTGCGCCATTGACATGTTCTTTAGACACC
GACCGATATGTGATCGATGGGAACAATAAAATGTGATTTCATGTGAGTGAAGTCTTATGA
CTGCATTTTGTCTACGTGAAATTGTAGATACGTTTCGCCTTATTTATATTGAAGAAAATT
GCAAGGGGAGACGGGATGTAATAACATCTACAGCCGGACTTAATAAATATGACCCTTATA
CCCTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_17722 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g53850.1	345	2e-157	protein\|leucoanthocyanidin reductase, putative, expressed
Brachypodium v1_2	Bradi5g22830.1	340	0.0
Arabidopsis v10	AT1G61720.1	340	2e-101	\| Symbols: BAN \| NAD(P)-binding Rossmann-fold superfamily protein \| chr1:22791326-22792757 REVERSE LENGTH=340