barSeed - Barley Seed Development Database

Probe CUST_25819_PI390587928

Source Contig U35_17726

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25819_PI390587928	Hv_44K_v2	TAACTTACTCACCCTTAGATGCAATCGATTTGAAGTCATCAAGATTATTATGTGCTCGAA	685	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76554.3	735	2e-24	630 - 689	100	60 / 60	plus	ABC10458 ABC10459 ABC10460
MLOC	MLOC_76554.2	652	2e-24	560 - 619	100	60 / 60	plus	ABC10458 ABC10459 ABC10460
MLOC	AK361395	2973	7e-23	2909 - 2968	98	59 / 60	plus	ABC10458 ABC10459 ABC10460
JLOC1	JLOC1_51046.1	733	8e-25	635 - 694	100	60 / 60	plus
Harvest21	ABC10459	836	1e-23	686 - 745	98	59 / 60	plus	ABC10459
Harvest35	U35_17726	836	3e-25	686 - 745	100	60 / 60	plus

Contig Sequence (836 bp)

>U35_17726 836 Hv_44K_v2
GAGAGATTGCTGGTGCTTTTAAAGTGTTGAACCCTTAAGTTATAAAGTGCTCCAGTGGCT
TCATTGAAGAATAACAATACTTGGAAAGAAATGAGCACATCACATTGACTCAGAAGGCAG
TATCAAATAAAAATGTACCATCTTCAATTCACTCGGATGTGCAATCTCCGAAAAAAACTG
TAGGTTCAGCAAAGAAGCAGAGATCTGCAAAGCAAGGGTTGGGGCGTCCTACTAGATTGA
ATTTAGCTCCACATGCTTGGCTTACTCGTTCTAGGGTCCGGGCATTATCTATTTCCACAC
CCGAGTCTCTCAAAATGAGAAGGACCAGATCAGGTCGAGTGATAGTACCTCAATTGGATT
CAACAAGAAGTTGGGTTGTCTATGACAGGGATCGGTTCATTTCAGGCGTTGCTCATACGC
ATAATGGGGGCTAACTTGGCTAACTGGCAAGTTAGCGAGACTTGCATGCAAGTCCAGAAG
GTAACGACTTGAGTTTCGACATGGAAGTTCCAAGGCTCCAGCACCAAGCGGTGGCTGACA
GTATAAGATCCACTTGTTTCTACCACTGGATATTTGCATATTAGGACCTTGTAATGTCAG
ATATGGGCAGCTTTTATTTTTGTGCAATCGATTTGAAGTCATCAAGATTATTTTTGTGCA
ATCGATATGGGACCTGGATATCAACTAACTTACTCACCCTTAGATGCAATCGATTTGAAG
TCATCAAGATTATTATGTGCTCGAAAAAAAAAAAAAAAACGTCTCATCTTGGATTGGGTA
AATGGTTTGAGATACACAACATTTGAATTTTCAAAAAAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_17726 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None