barSeed - Barley Seed Development Database

Probe CUST_25815_PI390587928

Source Contig U35_29701

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25815_PI390587928	Hv_44K_v2	AACTTCAAAGTTGGTGAGATGTCCTGCATTTGCTTTCTCTATCTTCATCGTTGCCGCTGC	186	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249574.1	923	7e-23	276 - 335	98	59 / 60	minus	ABC15028
MLOC	MLOC_65073.1	897	7e-23	224 - 283	98	59 / 60	minus	ABC15028
JLOC1	JLOC1_42793.1	1169	4e-23	177 - 236	98	59 / 60	minus
Harvest21	ABC29123	528	3e-25	187 - 246	100	60 / 60	minus
Harvest21	ABC15028	870	1e-23	206 - 265	98	59 / 60	minus	ABC15028
Harvest35	U35_29701	528	3e-25	187 - 246	100	60 / 60	minus
Harvest35	U35_21190	870	1e-23	206 - 265	98	59 / 60	minus

Contig Sequence (528 bp)

>U35_29701 528 Hv_44K_v2
CTCCTGCTCGCAATACACTGCCGCCGCCGCCGCCGCTCCCGCATCTCCCATCCTCGCTCG
GTGCAGAACCAGGTCGCCGCTCCCCCTGATCACACAGAACGAGACACTCGTGGATCGAAT
TCGCGCCGCCCCAGTCCAGTCCAGCCCGAATACTGCATCGATCTATCTACTTTGCTCCCG
TGCACGGCAGCGGCAACGATGAAGATAGAGAAAGCAAATGCAGGACATCTCACCAACTTT
GAAGTTCTCGACTTCTTACGGACTAGAGGTGCAAAAATTGATCCCATGGGATGTTTGGGG
GCTGTTGCTGCGTCAGAGTGTAAGGTATATGAGTACCTCCTAAAAACTCCTGCTTGCAAC
CAGACAAGGGAATCAGTTACTGAATTTGCAAACAGATGTGAGGGCTTCAAGCTTACTGAT
GCTGACAAGCAAAACATTATCAATTGGAGGCCAGCCTCAGCAGCTGATGTTTATGCGATG
GTAGAGGAGTGTGGGAAAAGATTTTGCAAGGATGAGCGAGGAATGGCG

Homology of Contig U35_29701 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g30510.1	141	4e-64	protein\|DNA-directed RNA polymerase III subunit RPC9, putative, expressed
Brachypodium v1_2	Bradi4g07190.1	218	5e-66
Arabidopsis v10	None