barSeed - Barley Seed Development Database

Probe CUST_25814_PI390587928

Source Contig U35_29702

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25814_PI390587928	Hv_44K_v2	GAAGATTGGACAGAGTTGCGAGTCTCGTCTTATATACGTACAACAGTGCTAACAGCTCCT	276	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63669.1	2408	2e-24	48 - 107	100	60 / 60	minus	ABC09962
MLOC	MLOC_63669.2	2871	2e-24	46 - 105	100	60 / 60	minus	ABC09962
JLOC1	JLOC1_41727.1	4555	8e-25	1812 - 1871	100	60 / 60	minus
Harvest21	ABC29125	336	3e-25	277 - 336	100	60 / 60	plus
Harvest21	ABC09962	353	3e-25	277 - 336	100	60 / 60	plus	ABC09962
Harvest35	U35_29702	336	3e-25	277 - 336	100	60 / 60	plus

Contig Sequence (336 bp)

>U35_29702 336 Hv_44K_v2
CGCGGCGCCGATGCCGCCGGCGACGGCGATGGAGCCCGGGAGCTCGCAGGTGAGGAGCGG
GGCGCTGACGTGGAGCGACGGCAGGCACGCCGTGGTGAGCCCGATCGTGGTCACGCTGCA
AGCGCCAGTGCAGTAGGCAGGCCGGCTCATTCTAAAGATCGATCGATTCTAAAGATCAAT
CGACCGAGCCAAGTTAACACGATCTCCGGCATGTAGACTACCTACGTACGTACTTACTAC
TAGTGGCTATGATTTGGATCAAGAGCTTTTCTTAGGGAAGATTGGACAGAGTTGCGAGTC
TCGTCTTATATACGTACAACAGTGCTAACAGCTCCT

Homology of Contig U35_29702 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None