- Probe CUST_25807_PI390587928
- Source Contig U35_29709
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_25807_PI390587928 | Hv_44K_v2 | CAGGGAACCACCATCTGCCAGAAGATTTTAGATGTTCGCGGTTCATAATCCAAGAGATAT | 516 | GeneList: skyblue3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.205 | 1.082 | 1.081 | 0.813 | 0.334 | 0.281 |
| Raw | 125.349 | 166.579 | 155.678 | 182.811 | 25.558 | 24.144 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK376759 | 4417 | 3e-22 | 3468 - 3526 | 98 | 59 / 60 | plus | ABC34490 |
| MLOC | MLOC_11252.1 | 2228 | 3e-22 | 1341 - 1399 | 98 | 59 / 60 | minus | ABC34490 |
| MLOC | MLOC_11252.2 | 2217 | 3e-22 | 1330 - 1388 | 98 | 59 / 60 | minus | ABC34490 |
| MLOC | MLOC_11252.4 | 2088 | 3e-22 | 1222 - 1280 | 98 | 59 / 60 | minus | ABC34490 |
| MLOC | MLOC_11252.3 | 1262 | 3e-22 | 938 - 996 | 98 | 59 / 60 | minus | ABC34490 |
| JLOC1 | JLOC1_7435.2 | 1533 | 1e-22 | 441 - 499 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_7435.1 | 1544 | 1e-22 | 441 - 499 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC29136 | 579 | 3e-25 | 517 - 576 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_29709 | 579 | 3e-25 | 517 - 576 | 100 | 60 / 60 | plus |
Contig Sequence (579 bp)
>U35_29709 579 Hv_44K_v2 TTATCATGCACCATACTGAGATTTGACAGAGAAAATGCCAGTCAGCATGGCGATTTTTAC AATGAGATAATAGCAGAACAGTATGGCAAGCTGTGCATTGCACTTGATGTTCTTCATGAA TGTTTTGTTACTATAATCGAGCCCAGCACACGAAGAGATCTTTCTGAAGATATTGTGTTC AATAGAGAATCAGGTCTCAGACGGCTTAATTTTAGGGGATTCTACACACTAATTCTCCAG AAAGATGGTGAGCTAATATCTGTCGGCACTTTTAGGGTATGCGGGAAGAAGTTTGCTGAG CTACCTCTTATTGGCACAAGAGTTCAATATCGTCGACAAGGAATGTGTCGCCTACTGATG AATGAACTGGAGAAGTTACTTTCTGGCTTGGGGGTGGAAAGGCTTGTCTTACCGGCGATT CCTCAGCTTCTGGAAACATGGACAGGATCATTTGGTTTCAGAGCAATGTCTTTCTCTGAC AGGTTTGAATTGGCAGAGAGCAGCATTCTCAGTTTCCAGGGAACCACCATCTGCCAGAAG ATTTTAGATGTTCGCGGTTCATAATCCAAGAGATATGAG
Homology of Contig U35_29709 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os07g49290.1 | 745 | 7e-60 | protein|PHD finger family protein, putative, expressed |
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | AT5G58610.1 | 1065 | 3e-51 | PHD finger transcription factor, putative | chr5:23686771-23691053 REVERSE LENGTH=1065 |