barSeed - Barley Seed Development Database

Probe CUST_25806_PI390587928

Source Contig U35_17730

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25806_PI390587928	Hv_44K_v2	TCTGCTTCAAAATCAGGCTTTATACTGTATGCCATTCATTTCTGTTTCTGATGGAAAACT	1313	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.305	1.508	1.645	0.958	0.311	0.361
Raw	4906.623	8836.797	8384.243	7884.140	869.864	1107.823

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70628.1	1615	7e-23	1 - 57	100	57 / 57	minus	ABC09682
JLOC1	JLOC1_46878.1	1621	8e-25	1419 - 1478	100	60 / 60	plus
Harvest21	ABC09682	1327	3e-25	1229 - 1288	100	60 / 60	plus	ABC09682
Harvest35	U35_17730	1414	3e-25	1314 - 1373	100	60 / 60	plus

Contig Sequence (1414 bp)

>U35_17730 1414 Hv_44K_v2
TGTTGGCTCACTGGAAAACCTCTACCACAGCCGCCACCCCACCAAATCACCCGTCTCGCA
CGGCAACCCACCAGAGAGAGAGAGAGAGAGAAAGCGCGGATCTGCGCGATGGCGACGCTC
CAGCACCAGAACCAGGGGGCGGCGGCGCCGATGACCACGACCGGCGGCGGCCTGCGCGCC
ATGGACCTCTACGAGAAGCTGGAGAAGGTCGGGGAGGGCACCTACGGGAAGGTGTACAAG
GCCCGGGAGAAGGCGACGGGCCGGATCGTGGCGCTCAAGAAGACGCGCCTCCCGGAGGAC
GACGAGGGTGTGCCCCCCACGGCGCTCAGGGAGGTCTCGCTGCTGCGGATGCTGTCGCAG
GACCCGCACGTCGTGCGCCTGCTCGACCTTAAGCAGGGCCAGAACAAGGAGGGCCAGACC
ATCCTCTACCTCGTCTTCGAGTACATGGACACCGACCTCAAGAAGTTCATCCGCGGCCAC
CGCCAGAACCACCAGAAGATCCCTGCCCACACCGTCAAGATCCTGATGTACCAGCTCTGC
AAGGGCGTGGCTTTCTGCCACGGACGCGGTGTCCTGCACCGTGACCTCAAGCCGCACAAC
CTGCTCATGGACCGCAAGACCATGGCTCTCAAGATCGCCGATCTTGGGCTCAGTCGTGCC
TTCACGGTTCCTCTCAAGAAGTACACGCACGAGATCCTTACTCTGTGGTACAGAGCTCCT
GAGGTCCTTCTTGGCGCCACACACTACTCCACGCCCGTTGACATGTGGTCTGTGGGCTGC
ATATTTGCTGAATTGATCACTACCACGGCACTTTTCCCTGGAGACTCTGAGGTGCAGCAG
CTCCTGCACATTTTCCAGTTGTTGGGCACTCCAAATGAGGAGGTCTGGCCAGGAGTAGGC
AAGCTCCCCAACTGGCATGAGTACCCTCAGTGGAACGTCTCAAAGCTGTCTTCTGTAATT
CCCAGTCTCGATGCCGTTGGTATTGATCTGCTTGAGAAAATGCTGCAGTATGAGCCGGCA
AAGCGGATCTCTGCAAAGAAGGCCATGGAGCACCCATACTTCGATGATGTGGACAAGGCG
CTGTACTGAAGCTGTCTTGGTGGCTAACAAGAAGCGGATTTCTTGTGATTTGTGCTTGTC
CTGAAGCATATCTTTTGCTTCCAGGACAGGCATTTTTACCTCTGTTATTCCAGCTGCCAT
TTAGTTTGCACCACTGACTGATGGTTGTGATGGATAGTGGCTATGGAACTATGCATAATT
AAACCCCTCTTGTCAGGTGTCAAACACTGGTCTTGTGAAGCACTGCTTCTGCTTCTGCTT
CAAAATCAGGCTTTATACTGTATGCCATTCATTTCTGTTTCTGATGGAAAACTTGATAAA
TATAAAAGACTTCTGAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_17730 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g40170.1	327	0.0	protein\|cyclin-dependent kinase B2-1, putative, expressed
Brachypodium v1_2	Bradi3g40200.1	331	0.0
Arabidopsis v10	AT1G20930.1	315	3e-178	\| Symbols: CDKB2;2 \| cyclin-dependent kinase B2;2 \| chr1:7292752-7294664 REVERSE LENGTH=315