barSeed - Barley Seed Development Database

Probe CUST_25805_PI390587928

Source Contig U35_17731

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25805_PI390587928	Hv_44K_v2	TTGAGTAGTGTTGTGCTATTTCTGAAGAAATAATTATGCTCTGTGGAGACGCTTGTGAAA	1065	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.325	1.527	1.095	0.841	0.404	0.436
Raw	8734.840	15622.957	9831.723	11752.617	1988.507	2343.950

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361136	1148	6e-24	1060 - 1118	100	59 / 59	plus	ABC09978
MLOC	MLOC_13042.1	2330	6e-24	2220 - 2278	100	59 / 59	plus	ABC09978
JLOC1	JLOC1_8788.1	1081	3e-24	898 - 956	100	59 / 59	plus
Harvest21	ABC09978	1116	3e-25	1043 - 1102	100	60 / 60	plus	ABC09978
Harvest35	U35_17731	1139	3e-25	1066 - 1125	100	60 / 60	plus

Contig Sequence (1139 bp)

>U35_17731 1139 Hv_44K_v2
AAACCCCTCGACCACGAAAACCCTAAACCGCCGCCGCCGCCGCCGCCGCCGCCAGCCATG
GCCCTCTTCGCCGCCGCCCGCCGCGCTGCCTCCTCCTCGCTCCCCCTCCTCCGCGCCTCC
GCCTCCCGCGGCGCGGCCACCCGTGGCCAGGCCCTGCTCCGCCCCCTGGCCGCCGCGGCG
GCCCGCCCGATGCCCTTCTCCTCGGCGACCGCGCTGAAGCCGAGCTCCGACGACGAGCTC
CTCCGCGTCGTCAAGGCCGAGATCAAGTTCGCCGAGGACTGCGACGACCACGACCGGGTT
GAGGAGGTCCCAGATAGCTTCCCTTTCAAAATCACCGACAAGAAGGGGTTTAATGACATC
ACTCTTACAAGAACTTACCAGGGTGAGAAGATCGAGGTTCTGGTTTCCATGCCCAACCTA
GTCACTGGAGACGAGCCGGAGCATGACCAGGACGAGGATGACAAGGAGAAAGACGATGAT
CAGGATGACAGCGAGAAGCCCCCGAAATCCACTCTTCCCCTCACAGTCACCATCACCAAG
AGCAGCAGCGGCCCAAGCCTCGAGTTCACCTGCACCGCCTATCCTGACGAGATCCTCATT
GATACCTTGTCCGTGAAGCAGCCCTCTGCGAACTTGGAAGAGGAGGACATTGCATACGAG
GGTCCTGACTTCAATGACCTCGACGAGAACCTGCAGAGGGCATTCCACAAGTACCTGGAG
CTGCGCGGGATCACGCCCATGACGACAAACTTCCTGCACGAGTACATGATCAACAAGGAC
AGCAGGGAGTACCTGTTTTGGCTCAACAAGCTCAAGGATTTCGTCAAGCTGTAGAGAGTA
CAAGCTATGATCCTATCATAAGAGACGAGCCAATGTGCTTTGCACATCCTGTCCTGAGAC
CTTTGGGGCTTCGGAACTCAAAACTGCTCCGTGTTTAGTATACGATGACAATGTGTATGT
GCATGCTTATCGTCGTGTTTTAGATCGCTTTTTTGGCAGCGTGGAAACGACCGGGTGATG
CTAGAGCTGAAAACCTGGGTAGGGCTTCAGATAGAATATACTTCCTTGAGTAGTGTTGTG
CTATTTCTGAAGAAATAATTATGCTCTGTGGAGACGCTTGTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_17731 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g05010.1	265	3e-95	protein\|mitochondrial glycoprotein, putative, expressed
Brachypodium v1_2	Bradi2g02870.1	257	4e-104
Arabidopsis v10	AT5G05990.1	259	1e-57	Mitochondrial glycoprotein family protein \| chr5:1806911-1807895 REVERSE LENGTH=259