barSeed - Barley Seed Development Database

Probe CUST_25795_PI390587928

Source Contig U35_29711

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25795_PI390587928	Hv_44K_v2	ATCAGAATGATAAACAGTCAGACTGGTGCTTGCTCAACATGTCCTGATGTGGATGTTAAA	464	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364628	920	2e-23	858 - 915	100	58 / 58	plus	ABC29139
Harvest21	ABC29139	538	3e-25	465 - 524	100	60 / 60	plus	ABC29139
Harvest35	U35_29711	538	3e-25	465 - 524	100	60 / 60	plus

Contig Sequence (538 bp)

>U35_29711 538 Hv_44K_v2
CGCCGGAAGCGGCCCGTCCCGCCTTCTTGGCCCCTCGGCCCCCGTACGAGTGGCGCTTGC
GTGGCGCCGGAGGCCACCGTCGAGCCGGTGCTGGACGTGCAACGGCGGCGGGGCGCCGCC
ATGGATCTGTTGCTGCAGTTCCATGCGTAGGATGAAGGGTTCATGAATCATGAGTACCTT
ATAGGAACAAAGGGATGAGCACCGGCTGCAACACCTTTTTGCGCTGTATCATGTCCTTTG
GTCATCTTGTTCTTCAAACTGATTGCACAGCCAGTGCAAACAACATTCCAAACCAAGGCA
GCTAGGATGAACACAGTGATGTTCGAGCAAAAATATATGAATACGGCGAGAATCTGAGAC
ACTTGAGATCAGAGCGGGATGTCAGTAGAATGCTTCGGGCCTAGGGGTAGTTTTGTTTCT
GAACAAACCCTACTGTACTTCATTTCCTTCTACTATCATCTGACATCAGAATGATAAACA
GTCAGACTGGTGCTTGCTCAACATGTCCTGATGTGGATGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_29711 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None