barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_2578_PI390587928Hv_44K_v2CTTCCATCTCTTGGATAGATAGAGAGGGAGGGCAGAGGCCTTTGGTGTAGAAACAAAAAA579GeneList: plum1
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.4760.3000.6761.5892.4071.952
Raw 951.949900.3851910.1736720.7133689.6073221.127



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest35U35_151026503e-25580 - 63910060 / 60plus



Contig Sequence (650 bp)

>U35_15102 650 Hv_44K_v2
TCGGCTTTTCGCCACCTGGAGCTGTAGGTGGTTCCAAGGGTTGGGCTGTTCGCCCATTAA
TGCGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCATATCCGGTGTGGG
CGTTAGAGCATTGAGAGGACCTTTCCCTAGTACGAGAGGACCGGGAAGGACGCACCTCTG
GTGTACCAGTTATCGTGCCTACGGTAAACGCTGGGTAGCCAAGTGCGGAGAGGATAACTG
CTGAAAGCATATAAGTAGTAAGCCCACCCCAAGATGAGTGCTCTCTCCTCCGACTTCCCT
AGAGCCTCCGGTATCACAGCCGAGACAGCGACGGGTTCTCCACCCATACGGGGATGGAGC
GACAGAAGTATGGAAATAGGATAAGGTAGCGGCGAGACGAGCCGTTTAAATAGGTGTCAA
GTGGAAGTGCAGTGATGTATGCAGCTGAGGCATCCTAACGAACGAACGATTTGAACCTTG
TTCCTACACGGCCTGATCAAATCGATCAGGCACTTGCCATCTATCTTCATTGTTCAACTC
TTTGATGAAAAGATGAAAAAACCAAAAAAAAGCCCTGCCCTTCCATCTCTTGGATAGATA
GAGAGGGAGGGCAGAGGCCTTTGGTGTAGAAACAAAAAAAAAAAAAAAAA



Homology of Contig U35_15102 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None