barSeed - Barley Seed Development Database

Probe CUST_25782_PI390587928

Source Contig U35_17745

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25782_PI390587928	Hv_44K_v2	GAGTCAAATCCTCTGTATACCAAATTCCAGAAATACAATGGATGTACTTATTCGCTTCAA	1545	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.483	2.944	1.303	0.786	0.350	0.458
Raw	164.828	176.816	66.019	65.084	9.147	13.326

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC26800	632	4e-24	566 - 623	100	58 / 58	plus	ABC26800
Harvest35	U35_17745	1614	3e-25	1546 - 1605	100	60 / 60	plus

Contig Sequence (1614 bp)

>U35_17745 1614 Hv_44K_v2
ACCATGTTTGACTCACATGCCGAACATGGCCGTCGTGGGCAAATGGATCGTTGTGTGTGG
CCACCTTATATGAGAGCTTAGCTGATTGGGCACATAGATAGGTGGTTGTTGCATACTGGT
CTTCGTTCCTCCTCTGCCACCTTAGGCCCTGACCCTCGGCTTTGTTTAAAAGGATACATG
CTTCGTTGCTAGAGCGCTTGCTGTTGTTGGATTTGGGCTCGCGACCATGGCTCCTGCTCG
GGTTGGCCGGTTCCAGATGTCTAATCTCTCAGAGCCCTCAAAAGAAGACGGTTCAGTCGA
GAAAACTGGAGCTTGGAATAACACATGGAACACTCTTATGCGCCATGCTTCGGTCTATGG
TGTGGCTGCTGGTTATTGCCTGTCAGCATCTCTGCTCTCGATTATCAACAAATGGGCAAT
CATGAAGTTTCCCTACCCTGGAGCACTGACAGCTTTACAGTACCTCACTAGTGTTGCTGG
AGTTCTCCTTTGTGGACAGCTAAAGCTTATTGAGCCTGATAGACTGAATTTGAGAACCAT
GTGGAAGTTCTTGCCTGCTGCTGTTATGTTCTACATCTCAATCTTCACAAACAGCGAGCT
CCTGATGCATGCCAATGTGGACACTTTCATCGTGTTTCGGTCTGCTGTGCCGATATTTGT
GGCCATTGGGGAGACACTTTACCTTCACCAACCATGCCCATCTTTCAAGACATGGCTCTC
ACTTTCCACTATACTTGGTGGAAGTGTGATATATGTTTTCACGGATAACCAGTTCACCCT
GACTGCTTACAGCTGGGCGATAGCCTATCTGGCGAGCATGTCTATTGATTTCGTGTACAT
CAAACATGTCGTCATGACCATCGGGTTGAACACATGGGGCCTTGTGCTCTACAACAACCT
TGAGGCTCTGCTGCTGTTCCCACTTGAGCTCCTTATAATGGGAGAGTTCAATCAGATGAA
GGTCGACAGCTCCAAGATGACAACAAACTGGCTATCTTATGACGTGGTCCTTCCTGTTGC
TCTGTCATGCCTGTTCGGGTTATCTATATCCTTCTTCGGATTCTCCTGCAGACGGGCCAT
CTCTGCCACTGGATTTACGGTGCTCGGTATAGTGAACAAGCTCCTGACCGTCGTGATCAA
TCTGCTTATCTGGGACAAGCATGCATCCCTGGTGGGGACAATTGGGCTCTTGATATGCAT
GTCTGGTGGCGTTCTCTACCAGCAATCGACCACAAAGCCCAAGGTACCCAAGATTGAGCC
AAAGGAAGAGGACGATGAAGAGGGGCAGAATTTGCTGCAGATTCAGCCCGGGCATGAGAG
CAATTCAAGTCAAAAGCATTCCTCCTCATAAGCTTTTCTTTACCTTCCCTCGACAACCCA
TTCGTGATATATCTCAGATGAGAAATCCTGAACATGCTGTAGGACATTGATATTTCAAGA
GGAACTAAATTTCATTCTACAATATCTTTGTTACTGTATACTGCTTTTCATTGGTTAGAC
AGGATTGTGGTGGTGGTGTAGGGTACCAGACAACTCAACATACTAGAGTCAAATCCTCTG
TATACCAAATTCCAGAAATACAATGGATGTACTTATTCGCTTCAAAAAAAAAAA

Homology of Contig U35_17745 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g11590.1	380	2e-180	protein\|integral membrane protein, putative, expressed
Brachypodium v1_2	Bradi1g69910.2	379	0.0
Arabidopsis v10	AT1G76340.1	372	1e-142	\| Symbols: GONST3 \| golgi nucleotide sugar transporter 3 \| chr1:28635188-28636306 REVERSE LENGTH=372