barSeed - Barley Seed Development Database

Probe CUST_25781_PI390587928

Source Contig U35_17746

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25781_PI390587928	Hv_44K_v2	CTTATGGCCCTCGGAAGAAAATATGTACTAAATCAGTGACAATTTGTATCGATCGGAGGG	1435	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59103.1	2964	2e-24	43 - 102	100	60 / 60	minus	ABC08350
MLOC	MLOC_59103.2	3270	2e-24	40 - 99	100	60 / 60	minus	ABC08350
JLOC1	JLOC1_38439.1	3045	8e-25	2938 - 2997	100	60 / 60	plus
Harvest35	U35_17746	1532	3e-25	1436 - 1495	100	60 / 60	plus

Contig Sequence (1532 bp)

>U35_17746 1532 Hv_44K_v2
TGCTGGGGTATCTGCCAATGATGCAGAAGCCATTTGCAACTTGTTTGTGTCAGCATCAGA
ACAATTAGCGAAAAATCTAGACCGCCACAGCTTAAATGAACATGGGCTTTCTAAAAGATA
TGTTCGCTGCTTGCAGATATCAGAGGTGGTGAATAACATGAAGGACTTAATTGAGTTCAG
CCACAAGAACAAGCTTGGTCCTATAGAGAGCCTGAAGAACTATCCCAGACAAATGGGGCC
AAAGCTTACAATGCAGAACATGCACGAGGCAAAGGGGACCAGCACGGAAATGAGCACCCA
TGGGAATAATAACGAGGCCCCAGGTGCCAGTACCATTTGTAGCAGTCCGCAGAATGCCGC
AGCACAAAACAACTACCAGAATATGCTGAGAAGCTCAAGCGCAAACCAGGGTTTGCTTCA
GCAGGAGGCGTCACAGAATGCCGCGGTGCTAAACAATTACCAGAATATGCTTAGAAGCTC
AAGCGCAAACCAGCTTCAGCAGGAGGCATCACAGAATGTGGCGGCACTAAACAATTACCA
GAATATGGTTAGGAGCTCGAGCTCAAACCAGAGTTTGCTTCAGCAGGAGGCATCAAGTAT
GTTTAAAGGCTCCACAGGAATGCACAATGGCGTTCAGCTGGATGTGTCTAGATCCTTCCG
TGCGGGTCAGCTTGGCCAGTTCCAGCAGCATCCTATGTCGTTCCAGCAAGCTATGCCCCA
GCATCAGCAGAACAGTTTTGGGGCTGGTGTGAGTACACAGTACCAGCAGCACCTCATCCA
GCAGCTGCTGCAAGAAGCCAAGAGTAGCAACAACCGCATAATGGTGCAACAGCAGCAGCA
GCCTACCAGCGCGGGAGCCGTGATCACCAACAGCCCTGCTAGTGGAGAGGCACATGACAT
GAATAGTGGAGCCGCGAAGGGCGCCCCTCCAGCGAGTACGACGGGGCCCAGCAATCTAAT
CAACAGCGCAGCCGGCATGGTCCAACGATGCAGCAGTTTCAAGTCGGTGAGCAGCAACCC
GGCTGCTGCTGTGGCTACTTCCGGTGGAAACCCGGTGAGTCCCAAGGCGGAGTCCATGCA
CGAGGTGCCCGAGCTGGACCATCTCATCAGCAGCGAACTCGCGGAGAGCGGGCTGTTCTT
GGAGGAGCAGCAGGGAGGCGGCGCGTACTCGTGGAACATGTGACCCGCGCACTGCTAAAC
CGGTTGTTTTTAAGTAAAACGCTTTAGATTATTTGAACTTTTTGTCTTTTTTCGAGCTTT
CGTGTCGCTGACTAGAACAGTTTCTGATGATCATGAACCGATGACTGATGAAACCTTCAG
TTATGTGAGAGTGTGAGGGATCTGGCTGGGAAACTTGAGAGCAGTGCAAGCCAGTGTTAT
TAACTAATGAATGCCATAGCATGGATTATCATTGTCCTGCATTCTTGCTGATTTTCTTAT
GGCCCTCGGAAGAAAATATGTACTAAATCAGTGACAATTTGTATCGATCGGAGGGACTAA
AAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_17746 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g03600.2	776	3e-105	protein\|transcriptional corepressor SEUSS, putative, expressed
Brachypodium v1_2	Bradi1g49497.1	815	1e-159
Arabidopsis v10	None