barSeed - Barley Seed Development Database

Probe CUST_2577_PI390587928

Source Contig U35_15103

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2577_PI390587928	Hv_44K_v2	GAGATGCCAAATGTATAATCAGAGTAATTTATCTATGCAGTCCCGCCTCCATCCAAAAAA	1380	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.925	1.601	1.098	0.761	0.342	0.158
Raw	295.783	391.518	234.664	250.068	40.228	20.000

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58581.1	2792	9e-22	2728 - 2782	100	55 / 55	plus	ABC02080
MLOC	MLOC_58581.3	2597	9e-22	2501 - 2555	100	55 / 55	plus	ABC02080
JLOC1	JLOC1_38078.1	2699	5e-22	2511 - 2565	100	55 / 55	plus
Harvest35	U35_15103	1461	3e-25	1381 - 1440	100	60 / 60	plus

Contig Sequence (1461 bp)

>U35_15103 1461 Hv_44K_v2
AAAACCCCACCTGCTCACTTCTCCACCCAAACCCAATCCAAAATCTTTCCCTCCCTCCCA
TCCTTTCTCCGCCTCCGCCTCCGCCTCCGCCTCCGCCTCTGCGGCCGCCGGTGACGCGCC
AGCCGCTAGCCAGCCATGTCGTGCTCCCACCTCTCCACCGCGTGGTCCTCATCCGCGCTT
GCCAGCACTTCCACCCGCCGCCGCGCCTCCACCGGCAGCAGCCTGGTGGTGCGGTGCTCC
CTCCGGGACCTCCGCAACCGCATCGACTCTGTCCGCAACACGCAGAAGATCACGGAGGCG
ATGAAGCTGGTGGCCGCCGCCAAGGTCCGTCGCGCGCAGGAGGCCGTGGTCTCCTCCCGC
CCCTTCTCGGAGGCTCTGGTGGAGGTGCTCTACAACATGAACCAGGAGATCCAGTCGGAG
GACATCGACCTGCCCCTCACCCGCCAGCGCGCCGTCAAGCGCGTCGCGATCGTCGTCCTC
ACCGGCGAGCGTGGCCTATGCGGCGCCTTCAACAACAACGTGCTCAAGAAGGCCGAGGCC
CGCATGGAGGACCTCAGGCAGCTGGGCGTCGAGTACAAAGTCATCAGCGTCGGCAAGAAG
GGCAACGCCTACTTCCAGCGCCGCGACTACATCCCCACCGAGCGCTTCCTCGAGCTCGCC
GGCATCCCCACCGTCAAGGACTCGCAGGCCATTTGCGACCTTATCTACTCCCTCTTTGTC
GCCGAGGAGGTCGACAAGGTGGAGCTCGTTTACTCCAAGTTCGTCAACCTCGTCCGCTCC
GACCCCATCATCCAGACGCTGCTGCCCATGTCCCCTAAGGGCGAGATCTGCGACGTCAAC
GGCATCTGTGTCGACGCCACCGAGGACGAGCTCTTCAAGCTCACCACCAAGGAAGGCAAG
CTCACCGTGGAGCGCGAGAAGATCAAGATCGAGATGCAGCCCTTCTCCCCCGTCGTCCAG
TTCGAGCAGGACCCCGTCCAGATCCTCGACGCTCTCCTCCCGCTCTACCTCAACAGCCAG
ATCCTGCGTGCCCTCCAGGAGTCGCTCGCTAGCGAGCTCGCAGCCAGGATGAGCGCCATG
AGCAGCGCCACAGACAATGCCATCGATCTCCGAAAAAATCTCTCCATGGTCTACAATCGC
CGACGCCAGGCCAAGATCACCGGAGAGATCCTTGAGATCGTCGCTGGCGCCGACGCCCTG
TCCGGCTGATTCCTCCCTGGGCTGAGCTGCCACTGTTATATATAACTCTTTGCCTCCTTT
TCTCCTCTCTTCTAGTACTTATCTTGCTTGGTCTGTGTCTGTGTTTGTAATAATTTCTCA
TAGCACAAAAAAGGATGTCTGTTCTATCGCCCGGTGCGAGATACATAAGATTTCAGTTCG
GAGATGCCAAATGTATAATCAGAGTAATTTATCTATGCAGTCCCGCCTCCATCCAAAAAA
AAAAAAAAAAAGGCCACATGG

Homology of Contig U35_15103 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g32880.1	359	0.0	protein\|ATP synthase gamma chain, putative, expressed
Brachypodium v1_2	Bradi1g26350.1	361	0.0
Arabidopsis v10	AT4G04640.1	373	9e-157	\| Symbols: ATPC1 \| ATPase, F1 complex, gamma subunit protein \| chr4:2350761-2351882 REVERSE LENGTH=373