barSeed - Barley Seed Development Database

Probe CUST_25776_PI390587928

Source Contig U35_29721

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25776_PI390587928	Hv_44K_v2	AAGCTTCCAAGGAGGTTGATGGTGAATTTGCCTGATGCCTCAAATAGAAGAAAAATTATT	165	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362285	3902	9e-22	2973 - 3030	98	57 / 58	plus	ABC07960 ABC24913
MLOC	MLOC_4921.1	3584	9e-22	2402 - 2459	98	57 / 58	plus	ABC07960 ABC24913
MLOC	MLOC_4921.2	3362	9e-22	2400 - 2457	98	57 / 58	plus	ABC07960 ABC24913
JLOC1	JLOC1_3127.1	3404	5e-22	2400 - 2457	98	57 / 58	plus
Harvest21	ABC29153	225	3e-25	166 - 225	100	60 / 60	plus
Harvest35	U35_29721	225	3e-25	166 - 225	100	60 / 60	plus

Contig Sequence (225 bp)

>U35_29721 225 Hv_44K_v2
GGCATGTTGGGTAGACGTGAGAACCCTGGAGAGCATGAAGCCATGCGCAAGATGAAAAAC
GAGTTTATGGTGAACTGGGATGGGCTAAGAACAAAAGATAAAGAACGCGTATTAGTCCTT
GCTGCGACTAATAGGCCATTCGACCTTGATGAAGCTGTTATTACGAAGCTTCCAAGGAGG
TTGATGGTGAATTTGCCTGATGCCTCAAATAGAAGAAAAATTATT

Homology of Contig U35_29721 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None