- Probe CUST_25774_PI390587928
- Source Contig U35_29723
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_25774_PI390587928 | Hv_44K_v2 | AATGGGGTTCGAGCTGGTGATCTCGCTGCCCTTCATATTCTTCACCGTCCTGCTCGGCTT | 43 | GeneList: darkgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.923 | 1.689 | 2.762 | 1.799 | 0.613 | 0.447 |
| Raw | 377.822 | 1069.289 | 1519.823 | 1591.690 | 178.142 | 145.485 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_58905.1 | 1121 | 7e-23 | 271 - 330 | 98 | 59 / 60 | plus | None |
| JLOC1 | JLOC1_38297.1 | 846 | 4e-23 | 243 - 302 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC29155 | 242 | 3e-25 | 44 - 103 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_29723 | 242 | 3e-25 | 44 - 103 | 100 | 60 / 60 | plus |
Contig Sequence (242 bp)
>U35_29723 242 Hv_44K_v2 CATTTCCCGGACCTCGCCTCACCATCCTCGTACGCACGTCGGGAATGGGGTTCGAGCTGG TGATCTCGCTGCCCTTCATATTCTTCACCGTCCTGCTCGGCTTCGGCTGCTACTTCCTCG GCAAGCACAAGGGCCGCGAGGAGATGCGCGCCGGCGTCGGGGCCCATATCTACGGCACGC CCCTGCCGCCGCCCGGCGTCAGCGTCGCCGGGCAGTCCCCGGGGCCCTACCCCGCCCCGA TG
Homology of Contig U35_29723 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |