barSeed - Barley Seed Development Database

Probe CUST_25766_PI390587928

Source Contig U35_17753

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25766_PI390587928	Hv_44K_v2	CATGCATGCTCCGTTTCAATAATGTATTCAATTCAATAAGAAACAAGTCCACTTTTGGAC	1476	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.013	0.097	0.952	1.541	1.132	1.286
Raw	118.307	1611.568	14563.150	34838.267	9297.910	11602.050

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14606.2	1607	2e-24	1535 - 1594	100	60 / 60	plus	ABC07528 ABC07529
JLOC1	JLOC1_9973.2	1567	8e-25	1494 - 1553	100	60 / 60	plus
JLOC1	JLOC1_9973.1	1462	8e-25	1389 - 1448	100	60 / 60	plus
Harvest21	ABC07529	1565	3e-25	1475 - 1534	100	60 / 60	plus	ABC07529
Harvest21	ABC07528	420	3e-25	329 - 388	100	60 / 60	plus	ABC07528
Harvest35	U35_17753	1567	3e-25	1477 - 1536	100	60 / 60	plus

Contig Sequence (1567 bp)

>U35_17753 1567 Hv_44K_v2
GGGAGTGGAGGACTCAAGAACTCCTAGGCAGCGCACGTATCAGTTCTGTCTTCCTTTCTC
GAGATGGCGGCGGCAATGGCTGCAACGACAATGGTGACCAAGAACAACGGCGGCTCGCTC
GCCATGGACAAGAAGAACTGGTTCTTTCGGCCGGCCCCTGAGGTCGCCTTCTCTTGGAGC
TCGCAGCCCGAGTCCAGGAGCTTGGAGTTCCCACGCAGGGCTCTGTTCGCCAGCGTCGGA
CTCAGCCTGTCCCACGACGGGAAGGCTCGGCCCGCCGACGACGTCGCACACCAACTCGCA
GCCGCGGGCGATGCGGGCGTCCAGCAGGCCCAGAAGGCGAAAAAGGCCAAGAAGCAGCAG
CTGGGTCTGAGGAAGGTGAGGGTCAAGATCGGCAACCCGCACCTGCGTCGGCTGGTCAGC
GGCGCCATCGCCGGCGCCGTTTCGAGGACTTTCGTGGCGCCGCTGGAGACGATCAGGACG
CACCTGATGGTGGGAAGCTCCGGCGCCGACTCCATGGGCGGGGTTTTCCGGTGGATCATG
CGGACGGAGGGGTGGCCCGGCCTCTTCCGCGGCAACGCCGTCAACGTCCTCCGCGTCGCG
CCGAGCAAGGCCATCGAGCACTTCACTTACGACACGGCCAAGAAGTACCTGACCCCGGAG
GCCGGCGAGCCAGCCAAGGTCCCCATCCCCACGCCGCTTGTCGCCGGAGCGCTCGCCGGA
GTGGCCTCAACCCTGTGCACCTATCCCATGGAGCTCGTCAAGACCCGTCTCACCATCGAG
AAGGATGTGTACGACAACCTCCTCCACGCGTTCGTCAAGATCGTGCGCGACGAGGGGCCC
GGAGAGCTGTACCGCGGGCTGGCGCCGAGCCTGATCGGCGTGGTGCCGTACGCGGCGGCC
AACTTCTACGCCTACGAGACACTGCGGGGCGCGTACCGCCGCGCGTCGGGGAAGGAGGAG
GTGGGCAACGTGCCGACGCTGCTGATCGGGTCCGCGGCGGGCGCCATCGCCAGCACGGCC
ACCTTCCCGCTGGAGGTGGCGCGGAAGCAGATGCAGGTGGGCGCCGTGGGCGGGAGGCAG
GTGTACAAGAACGTCCTGCACGCCATGTACTGCATCCTCAACAAGGAGGGCGCCGCCGGG
CTCTACCGCGGGCTCGGCCCCAGCTGCATCAAGCTCATGCCCGCCGCCGGCATCTCCTTC
ATGTGCTACGAGGCCTGCAAGAAGATACTCGTCGACGACAAACAAGACGGCGAGCCCCAG
GACCAGGAGGAGACGGAGACCGGACACACACAAGGACAGGCGGCGCCCAAGAGCCCCAAC
GCCAACGGTGATCGACCATGAACGCGATCGACGAAGCATTATGCATGGTTACCGTCAAAA
TCAGAAGAAAATGCGTGATCTGGAATTTTCAAGTGTAGAGCCTAGCGCAATTGAATCCTA
AGGTGGAAGAGTTTGAATTTCGTTTTGTTCACGGAACATGCATGCTCCGTTTCAATAATG
TATTCAATTCAATAAGAAACAAGTCCACTTTTGGACTTTCAACTTAAAAAAAAAAAAAAA
AAAAAAA

Homology of Contig U35_17753 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g10800.1	426	2e-179	protein\|mitochondrial carrier protein, putative, expressed
Brachypodium v1_2	Bradi3g07500.1	447	1e-168
Arabidopsis v10	AT4G32400.1	392	2e-123	\| Symbols: EMB104, SHS1, EMB42, ATBT1 \| Mitochondrial substrate carrier family protein \| chr4:15638686-15640238 FORWARD LENGTH=392