- Probe CUST_25758_PI390587928
- Source Contig U35_46634
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_25758_PI390587928 | Hv_44K_v2 | TATATCGGGAAATTTGGTTCGGTGGCAACCAAGCCTTAAGCTTTGTTCAACGCACGTTAC | 55 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.353 | 1.369 | 1.162 | 0.938 | 0.417 | 0.518 |
| Raw | 328.045 | 520.474 | 390.694 | 500.407 | 76.154 | 104.233 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC46993 | 375 | 3e-25 | 56 - 115 | 100 | 60 / 60 | minus | ABC46993 |
| Harvest35 | U35_46634 | 375 | 3e-25 | 56 - 115 | 100 | 60 / 60 | minus |
Contig Sequence (375 bp)
>U35_46634 375 Hv_44K_v2 TTTTTTTTTTTTTTTTTACCAACTCCAAACAGCGATTATTGGGCGTCCAGTCACCGTAAC GTGCGTTGAACAAAGCTTAAGGCTTGGTTGCCACCGAACCAAATTTCCCGATATAAGAGA AAAAAACCGGAAAAAAACCCCCCCCAAATCACGGGGCTAAAAGTGGTGTACCGATTAAAG GATATACATAAGAGATGGTTTTGTCAGCATTGATGTTTCCAGGCATGGATGGAGGAGTGG CACCCCACTGGATTACTATCAATTTTGATGGAGGCGACTCGGACCGCCCTGGCCAGGTTC CTGCCTGGGCCGCGTCCTCTTCATTTTTGCTTCGACCCCCCCCCCCAGGGCCAAAGTCTC CACCGTGTTGACAAA
Homology of Contig U35_46634 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |