barSeed - Barley Seed Development Database

Probe CUST_25754_PI390587928

Source Contig U35_22681

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25754_PI390587928	Hv_44K_v2	CACCCTGGTGCCCTCGGCGCCCTCCGGCGCGTCCTACGCCGACTACGTGCTGCAGCACCA	374	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365088	1242	2e-24	374 - 433	100	60 / 60	plus	ABC14539 ABC36694
Harvest21	ABC23658	410	3e-25	336 - 395	100	60 / 60	plus
Harvest35	U35_22681	474	3e-25	375 - 434	100	60 / 60	plus

Contig Sequence (474 bp)

>U35_22681 474 Hv_44K_v2
ATGGGCCGCGCTCGCTCACTCCGCCACCACTCCACCTCACCGAAGATGTCGTCGTCGTCG
CCGCCGGCAGCCGAGCCCGCCACCGCCGCCCCGGAGATGTCCCCGCCGGAGGCACGTCTG
GCGATGATGGAGCTGGCCAACATGATCGCCGTCCCGATGGCGCTGACGGCCGTCATCCGG
CTGGGCGTGCCGGCCGCGGTGTGGGCTGGCGGCGCCAACTTGCCGCTCTCGGCCGCGGAG
CTGCTCCCGGCGGGCCACCCGGACCCGTCCGTCCTCGAGCGGCTCCTCCGCCTGCTCGCC
TCCCGCGGCGTCTTCTCGGAGCACGCAGCCGACGGCGGCCGGGAGCGGCGGTACGCGCTG
ACGGCCGTGGGGCGCACCCTGGTGCCCTCGGCGCCCTCCGGCGCGTCCTACGCCGACTAC
GTGCTGCAGCACCACCAGGACGCGCTGGTGCTGGCGTGGCCGCGGCTGCACGAG

Homology of Contig U35_22681 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g57760.1	366	1e-58	protein\|O-methyltransferase, putative, expressed
Brachypodium v1_2	Bradi3g55890.1	363	9e-64
Arabidopsis v10	None