barSeed - Barley Seed Development Database

Probe CUST_25749_PI390587928

Source Contig U35_22686

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25749_PI390587928	Hv_44K_v2	CAGCTTCTCAAGGATTACACCAACGGCTCAGAGAAAACCAACTTTCTATATCCTAGTGCC	516	GeneList: darkgrey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.047	0.173	1.163	1.749	1.091	1.015
Raw	14.419	71.257	487.645	1128.546	251.606	254.833

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36752.1	1689	2e-24	1172 - 1231	100	60 / 60	plus	None
MLOC	MLOC_36752.3	1296	2e-24	1148 - 1207	100	60 / 60	plus	None
MLOC	MLOC_36752.2	2234	2e-24	1165 - 1224	100	60 / 60	plus	ABC24673
JLOC1	JLOC1_23707.2	2592	8e-25	1449 - 1508	100	60 / 60	plus
JLOC1	JLOC1_23707.1	2335	8e-25	1192 - 1251	100	60 / 60	plus
Harvest21	ABC16681	1065	3e-25	517 - 576	100	60 / 60	plus
Harvest35	U35_22686	1065	3e-25	517 - 576	100	60 / 60	plus

Contig Sequence (1065 bp)

>U35_22686 1065 Hv_44K_v2
GTTGCGACTAGGTGGTACAGAGCTCCGGAGCTGTGTGGTTCTTTCTTCACCAAGTATTCA
CCGGCTATTGATACATGGAGCATTGGTTGCATTTTTGCGGAGATCTTGACAGGAAAGCCT
TTGTTCCCTGGTAAAAATGTGGTTCACCAGTTGGATTTGATGACTGATTTCTTAGGCTCA
CCATCGCCTGACATTATTTCTCGGATTCGAAATGAGAAGGCAAGGAGGTATCTGAGCACC
ATGAGGAAGAAGCTGCCAGTACCTTTTTCAGAAAAGTTCCCCAACGCAGATCCTGCAGCA
GTCAAGCTCTTGCAAAAGCTTCTAGCATTTGATCCAAAGGACCGACCGACTGCTGAAGAG
GCGTTGGCTGACCCCTATTTCAAAGGTCTTGCGAAAGTGGAGAGAGAGCCATCATGCCAA
CCGATTTCGAAAATGGAGTTTGAGTTTGAACGGAGAAAGTTTACCAAAGAGGAGGTCAAG
GAACTTATATTCAGGGAGATATTGGAGTACCACCCTCAGCTTCTCAAGGATTACACCAAC
GGCTCAGAGAAAACCAACTTTCTATATCCTAGTGCCGTCGACAACTTCCGGAGGCAATTT
GCTAACTTAGAGGAAGATGGAGGAAAAGGCGGGGCACCCGAGAGGAAGCATGTTTCTCTG
CCGAGGACTACAACAGTTCACTCTACCCCAATTCCTACAACAAGTGGTCCGGCATCCCAA
GCTCCTCAAAGGATCCCAACAGCTAGACCAGGCAGAGTGGTTGCCTCGGCGACACCGATC
GAGAACGCGGCCTTCGCCGATCGACAAACGGGTCGAAGGATGTCGAGGGACCCTGCGGCG
CCTCCAGCAGCAGCTGCCGCGGGCTACACCCTGAGGCCGGATTGCCCCGACAGGCAACAG
CAGCAGCAGCAGCAGGAACTGGAAAAGGACCGCACGCGCTACAGGCCGGCGCTCCATTTC
AGGGACGCCAGGGTCGCGCCCGAGGCCGAGGCGCGGCCCTCGGCCTACTACATTCCCCCG
TTCAACGGCATAGCCGCGGTCGCCGGTGGGTACAGCAAGGTCGGC

Homology of Contig U35_22686 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g49140.2	570	2e-157	protein\|CGMC_MAPKCMGC_2.8 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed
Brachypodium v1_2	Bradi2g16337.1	582	2e-161
Arabidopsis v10	AT2G42880.1	606	7e-114	\| Symbols: ATMPK20, MPK20 \| MAP kinase 20 \| chr2:17840572-17843947 REVERSE LENGTH=606