barSeed - Barley Seed Development Database

Probe CUST_25747_PI390587928

Source Contig U35_22688

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25747_PI390587928	Hv_44K_v2	TTCCCAGCTATGCATCTGCTTTCATCCAGTGAACAATAATTTGCTGTTAGTTGGCAATGC	695	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.610	0.775	1.188	1.743	1.007	1.367
Raw	12.960	22.704	33.864	77.271	15.722	22.304

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21781.4	1490	2e-24	685 - 744	100	60 / 60	minus	ABC38213
MLOC	MLOC_21781.5	1487	2e-24	687 - 746	100	60 / 60	minus	None
MLOC	MLOC_21781.3	1150	2e-24	833 - 892	100	60 / 60	minus	ABC38213
MLOC	MLOC_21781.2	1788	2e-24	979 - 1038	100	60 / 60	minus	ABC38213
JLOC1	JLOC1_15104.2	1778	8e-25	740 - 799	100	60 / 60	plus
JLOC1	JLOC1_15104.1	1668	8e-25	630 - 689	100	60 / 60	plus
Harvest35	U35_22688	758	3e-25	696 - 755	100	60 / 60	plus

Contig Sequence (758 bp)

>U35_22688 758 Hv_44K_v2
CCCGACTTCCTCAGCTGCGTCCTCCAGCCCCCGACCCCCTCCTCCTCCTCCTCCCGCCCC
GACCCCGACTACGCCGCCCTCCGCCGCCTCCTCCTCCGCCGCAAGTCTCCCTCCGGGCTC
AACCATCGCATGGAGTGGCGGTGCAACGGCAAGGGGTACGTCGCATACCGGAAATTCCTC
CTCCGCCGTATTGACGGCGGTGGCGCATCAAGCAGCGCCCACAGCACGCCCGGCAACAGT
GGGAGGTGGTTTGCTAGCCCTACTGCATTTTCTGAAGCAGACAGCTGGAGTTCTATCAGG
GACCTCAGAAGTAACAGCGGTATGTTAAGCCGCACCTTGAGTGTCAGCTCAAAGCAGAGC
GAACCTGAGCGCCATGTCAGATTCGCCGAACCTGCATACTCATTTGTTGGAATGCATTGC
ATCTTTGACAACTGCAAAGCATCAGTTACCGTATTGAAATTTGGCCGCATGAATTCAGAT
GTGCTTGCTTATGGTTCATCCGATGGCACTTTGACGGTTTGCCAGGTTTCTGAGCCGCCA
TCTGTTCTTCAAAAATTAACAGGACATTCTAAAGATATCACAGATTTTGATTTTTCATCT
AATAACCAGTACATAGCTTCATGCTCTATGGATAAAACTGTGAGAGTGTGGGAGATCTCT
AAAGGCACTTGTATCAGAGTCGTATATGGAGTTTCTTCCCAGCTATGCATCTGCTTTCAT
CCAGTGAACAATAATTTGCTGTTAGTTGGCAATGCAAA

Homology of Contig U35_22688 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g56860.1	479	8e-137	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi2g51580.1	479	7e-147
Arabidopsis v10	AT2G16405.1	482	7e-89	Transducin/WD40 repeat-like superfamily protein \| chr2:7105915-7108787 REVERSE LENGTH=482