barSeed - Barley Seed Development Database

Probe CUST_25746_PI390587928

Source Contig U35_22689

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25746_PI390587928	Hv_44K_v2	CACTTGTAGAGCTTGTGGCTGTGATTACCATTGTATCCAAGTTATATGATGTAATAGACT	759	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12328.5	1306	2e-24	1151 - 1210	100	60 / 60	plus	ABC16703
MLOC	MLOC_12328.2	1121	2e-24	970 - 1029	100	60 / 60	plus	ABC16703
MLOC	MLOC_12328.1	1209	2e-24	1058 - 1117	100	60 / 60	plus	ABC16703
MLOC	MLOC_12328.3	1799	2e-24	1648 - 1707	100	60 / 60	plus	ABC16703
MLOC	MLOC_12328.4	1685	2e-24	1534 - 1593	100	60 / 60	plus	ABC16703
JLOC1	JLOC1_8272.3	1658	8e-25	1503 - 1562	100	60 / 60	plus
JLOC1	JLOC1_8272.2	1133	8e-25	978 - 1037	100	60 / 60	plus
JLOC1	JLOC1_8272.1	1221	8e-25	1066 - 1125	100	60 / 60	plus
Harvest21	ABC16703	872	3e-25	54 - 113	100	60 / 60	minus	ABC16703
Harvest35	U35_22689	872	3e-25	760 - 819	100	60 / 60	plus

Contig Sequence (872 bp)

>U35_22689 872 Hv_44K_v2
CGGAAGTGGATCCGGCTCTGGCGGAGCTCGATGCGGCGGCCTCCTCGGATTTCTCCAAGA
CGTCCTCCTCCTCCACTACCGACGCGCTCAGCTCCGTCGTCACCGCCGTGGTGCGCACGC
CGCCCAAGGACTTCCGCGTCATCAGGAAGGAGTGGGGGCCCATCCGAATCTAGACCGCCT
TCCGCGGCTTCCTGGCCATGAGGGCGCTACGAGGGATCGTGCGGCTGCAGGCGCTGGTGC
GCGGCCGTCGTACGCAGCTGGCCGTCACATTCAAGTGCATGCAAGCGCTCGTCAGGGTGC
AAGCGTGAGCGAGGTACCCTTAGTTATTGTTTCTTGTGTCTCCGCCACCTGCGCTGAGGA
CAAGTCCGACGGCGTTCAGTCCTCCTTCACCATGGTCTCCCTCAAGTCTGCCATCTTCTA
GCTTGTTGATGAGTTAATCATGCTTGGAGTTCGAATTGGTGGTGGCTTGAACAATTTGCC
TGGACTTGACCATGAAGAGTTGTCAGAAGTATCTATCAAGTCGTGTCCTGCAGAGGAATT
TTTTTCTCTTCATGCTCTTGAAGTCCAACAATTATGGAAATAAGGACGACAATGGCTTGT
TGGAATTCGTTGAAGAAGCTCTTGCTTTGCTCCGTTCGGCAACTCTTGCTCTGATGAGGT
CCCTTCAAGAGGCTATTGCTGCAGAATAACCTAGAAGTGAATATTTGTCATTAGCTTTAA
ATGGAGAGAAGTTGAACGAGGAGCTTGTGGTTGTGATTACACTTGTAGAGCTTGTGGCTG
TGATTACCATTGTATCCAAGTTATATGATGTAATAGACTTATTTTGGTTGTTATTTGGAG
TATTATGTGGCTTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_22689 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None