barSeed - Barley Seed Development Database

Probe CUST_25738_PI390587928

Source Contig U35_34667

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25738_PI390587928	Hv_44K_v2	TATGCCTTCTCTTAGGTGCGGCCTAGCACATATTACCAGGTTAGCATACTTCTGCATAGT	705	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.497	1.383	0.777	0.936	1.167	1.039
Raw	21.304	12.218	6.190	10.811	3.279	3.298

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76376.1	592	2e-24	378 - 437	100	60 / 60	plus	None
JLOC1	JLOC1_50932.1	594	8e-25	380 - 439	100	60 / 60	plus
Harvest35	U35_34667	768	3e-25	706 - 765	100	60 / 60	plus

Contig Sequence (768 bp)

>U35_34667 768 Hv_44K_v2
GGCGAATTGGGCCCTTTCGAAAATGCTCGAGCGGCCGCTATGGTAACCATCGTGAAGAAA
TCATCTTGGATGAGAATGCCGAGAGGCCTCGAGTCGACTTGATGGTGATGCCTGGTTTCT
TGATCGGGACTAGCGTCATACAGTCTCGAGTGTACCTTTCTGGTGTAAAATGTGCCGACT
GAAAGTGTTAGGGTTGCCTGAGAAGATTCTGGGTATTTCACACATCATGCAAGATTATCG
TATGTCGTATGCAAATACTGCCTCTCCAAAATGTTATTTCGTACGAAATGTGGTAGCTAC
ACCTTTTTGCAAAAACATACTGTACTAGTATGGTTTGGTCATTTGAGGACTGTAATGTGT
GCTTTCTTTGTTTTGTAATGTAATGTAATGTAAATCCTGCCCCAACATTTGGTCTACATA
TAAATTAAAACATTTGGTCAGCGGCCGCTGGACATTGCTATGTCTTTTCTTGTTGCAAAT
GTGACCGGAGCTCCACCAATATGGGTCCAAGGAAGAATTTTTGAGATCGGATCGGCCGGC
ATCAGCAGTCTAAAAGGCCACGATTTGCGGAGATCTAGATGTTTGAATGCATTTATTTCC
ATGTATGGCCATATGCCCCTGGTAGCGACTACAGTCAAGGCTGTTGATAGCCGAACTAGC
TGGTTTTGGTGATATGGTTTTAAGTTCAGTTTGGTTTAGCGTTATTATGCCTTCTCTTAG
GTGCGGCCTAGCACATATTACCAGGTTAGCATACTTCTGCATAGTTAT

Homology of Contig U35_34667 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None