barSeed - Barley Seed Development Database

Probe CUST_25728_PI390587928

Source Contig U35_46649

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25728_PI390587928	Hv_44K_v2	GAGTACATGCCTAACAAGAGCCTCGACGCATTTATCTTTAATCCTGAAAAGCGAGGTCTC	397	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368929	2918	2e-24	1992 - 2051	100	60 / 60	plus	ABC18728
MLOC	MLOC_17942.1	1761	2e-24	943 - 1002	100	60 / 60	minus	ABC18728
MLOC	AK362066	2833	7e-23	1839 - 1898	98	59 / 60	plus	ABC18728
JLOC1	JLOC1_12401.1	1892	8e-25	816 - 875	100	60 / 60	plus
Harvest21	ABC47034	531	3e-25	398 - 457	100	60 / 60	plus
Harvest35	U35_46649	531	3e-25	398 - 457	100	60 / 60	plus

Contig Sequence (531 bp)

>U35_46649 531 Hv_44K_v2
CAAAGATGCAGTGCACAGAAGGTGGAGGGCAAGACGTTCATCTACGAGATCTCAGCAAAG
TGCTGGCATGCTGGATATCTCACATTCGATTCCTTTCGACGATGAATCGGAGGACGGAAA
AAGTCATGAACTCAAAGTACTCTCCCTGGACCGCATTAAAGCTGCTACCGGTAGTTTCAG
GGAATCCAACAAGCTTGGGGAAGGTGGATTTGGCCCGGTTTATATGGGAACATTACCTGG
TGGAGAAGAAGTAGCTGTGAAGAGGCTTTGTAAGAACTCAGGTCAAGGCCATGAGGAGTT
CAAGAATGAGGTCATACTGATTGCGAAGTTGCAGCACCGGAATCTTGTCAGACTATTAGC
TTGCTGTAAGCAGGGAGAAGAAAAGATCTTGGTTTATGAGTACATGCCTAACAAGAGCCT
CGACGCATTTATCTTTAATCCTGAAAAGCGAGGTCTCCTANACTGGAGGACACGGTTCGA
TATCATTGAAGGTATTGCTCGAGGGCTGCTGTATCTCCACCGGGACTCAAG

Homology of Contig U35_46649 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g36590.1	854	1e-86	protein\|serine/threonine-protein kinase receptor precursor, putative, expressed
Brachypodium v1_2	Bradi1g25180.1	848	6e-91
Arabidopsis v10	AT4G21390.1	849	2e-56	\| Symbols: B120 \| S-locus lectin protein kinase family protein \| chr4:11394458-11397474 REVERSE LENGTH=849