barSeed - Barley Seed Development Database

Probe CUST_25725_PI390587928

Source Contig U35_22692

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25725_PI390587928	Hv_44K_v2	CGGCAATTGCTCCATTGCCATATATGCTATTCTGATAGTGAATCCTACAATCTTTTTTGC	676	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67418.1	3452	2e-24	59 - 118	100	60 / 60	minus	ABC18232
JLOC1	JLOC1_44511.2	3452	8e-25	3335 - 3394	100	60 / 60	plus
JLOC1	JLOC1_44511.1	3076	8e-25	2959 - 3018	100	60 / 60	plus
Harvest21	ABC18232	757	3e-25	677 - 736	100	60 / 60	plus	ABC18232
Harvest35	U35_22692	757	3e-25	677 - 736	100	60 / 60	plus

Contig Sequence (757 bp)

>U35_22692 757 Hv_44K_v2
GCCCTGCAGCTGCATCCTCTGTACTGGATACAGACCTGCAAGAAATTGTTCAGGTGATAC
AGTCAAGTCGAGATGGTATCAACAAGCTGGTGGAATTACTGCAGCAGAAATTCCCGACTG
TTAAAAAGACTCAACTGAACCATAAAGTGAGGGAGATATCTGACTTTGTTGATAATCGCT
GGCAGGTTAAGAAAGAGATTCTTGACAAGCTTGGTTTAACTTCCTCACCACCTGTGGATC
GTCCCCAGAAGGCAAAAGTAGTAGCCGATCGTCCCTCGAAGACGAAAGGAATAGGCATGT
ACTTCTCAAAGCGGTGTTTACCCCCAGAAGAGGCAGTCAACGCCCTTGCATCTTCACCTG
AGCTTCGCTTGAAACCGAGAACTGTTCAAGGTAGCAATGGTGTTGCTGGTGCTCCTCAGG
TTGATCTGTTCCCCTCGCAGAAGTGATGGTCCTGACAAGCTGATCCTGAAGCAGGCTTTC
TTGAATTGGGTCCATGCATTGGCGGTTTAAAACAAGCAGAAACCTCTTGGGTAATAATCG
TGTAATACAAAGGCCACTCAGGTGCAATATGGCATTGCATCTTGCTCCGAGCTGTGGAGT
GATTTTTGGCAATCTGCTCTAGCTTTTGCGGTTTTATAGACATGGTGAAGCACATTCAGT
AATTCTGTCGTTGTCACGGCAATTGCTCCATTGCCATATATGCTATTCTGATAGTGAATC
CTACAATCTTTTTTGCATGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_22692 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None