barSeed - Barley Seed Development Database

Probe CUST_25723_PI390587928

Source Contig U35_22694

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25723_PI390587928	Hv_44K_v2	GCACCTATGTTTAAGGATAACCAATAATTTATCCCAGAAAAGGACTTATGATCAGTTTGG	667	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71099.1	1925	7e-23	26 - 85	98	59 / 60	minus	None
MLOC	MLOC_71099.2	1922	7e-23	26 - 85	98	59 / 60	minus	None
JLOC1	JLOC1_47218.5	1873	4e-23	1752 - 1811	98	59 / 60	plus
JLOC1	JLOC1_47218.4	1858	4e-23	1737 - 1796	98	59 / 60	plus
JLOC1	JLOC1_47218.3	1853	4e-23	1732 - 1791	98	59 / 60	plus
JLOC1	JLOC1_47218.2	1850	4e-23	1729 - 1788	98	59 / 60	plus
JLOC1	JLOC1_47218.1	2157	4e-23	2036 - 2095	98	59 / 60	plus
Harvest35	U35_22694	776	3e-25	668 - 727	100	60 / 60	plus

Contig Sequence (776 bp)

>U35_22694 776 Hv_44K_v2
AATACTTGCAAGCATCATAATGTTTAAGGATTGGTCTGGTCAGAGCCTTGGAAGCATTAC
TTCTGAAATATGTGGCTTGATTGTCGTGTTGTCCGGTACCATTTTGTTGCATGTCACAAA
GGATTACGAAAGAATCCCACAATCGAGAATAGGCCTTTATGCACCGCTGTCTCCCACGTC
GGCAACAAGATTGAACGGAGAACTACTGAGGCACGTCGAGGATGATGCGAGGAGAACCGA
CGACGAAGAGAAAGTCTTGAGACGGCAGGAGATGTACTAGCCACGTTGGAGGATGGCAGC
GATGGATGACGGAGCAGCTGTGATCAACACATTGCCGGCTACTCCATTGTGTTGTGTTGG
CCTGTACATAATTTGGTATTGCAGAAGCTGGAAGATACGGTATCCGGGAGACGGCGGAGT
TTCACCAGATAGGACATGTGCACAGATTGTTGCCAAGTTTTTTTCTCCTCATCCGTAATT
TTTCTTTTTTCCCTTTTCATTTTTGTTCACAACATTTCTTCTTCTTCTTCTTCTCTTTGT
ACAGTTTGAGTTTGTTGACTTGTTCAGAGCGATCAGGCGGAGTTTTCATGCATCTGAACT
ATGAATCTTGTACATTCTGTTAGCGCCGTTCTCGTAGAATTCCTTTTTTCTTTTCTTTTT
TGTTTCAGCACCTATGTTTAAGGATAACCAATAATTTATCCCAGAAAAGGACTTATGATC
AGTTTGGAACATGGATCAGCGGCCGCTCGAGCATCATCTGGAAGGCCCAATTCGCC

Homology of Contig U35_22694 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None