barSeed
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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_25718_PI390587928Hv_44K_v2AGTTGGAAAGGAAAATTACTATCCTTGGGAGGAAGACTGGTTCTCATAAATTCAATACTC549GeneList: darkslateblue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.2961.9011.3170.9280.5870.671
Raw 26.58056.75237.33738.6347.93411.494



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest35U35_346716123e-25550 - 60910060 / 60plus



Contig Sequence (612 bp)

>U35_34671 612 Hv_44K_v2
GGCGAATTGGGCCCTTTCGAAAATGCTCGAGCGGCCGCTATCTCTTCGCTTTGTTTTCGG
AGGTAACGTTGTCATAAAAGTCAATGATGACATTGGGTACTATTCTGAAACGAAGGGATT
AAGGCAAGGAGACTCTATATCTCCACTATTATTCAATCTAGTTGCGGATATGTTGGCCAT
TATTACTGACCGGGCTAAGCAAGACGGACAAATTGAGGGGTAGTCCCACATCTGATTGAT
GGGGGACTATCAATTCTTTAATATGGAGACGATATGATTCTTTTTATGGAACACGATTTG
GAGAAAGCAGTGAATCTGAAATTAATATTATCAGCTTTCGAAGAACTATCGGGATTGAAA
ATTAATTTTCATAAAAGTGAATTATTCTGCTTTGGCGAGGCTCAGGACGCAGCTGCTCAA
TATGCTGAGCTATTCGGATGTGAGCAAGGACAATTTCCTATTAAGTATTTGGGTACACTA
ATACATTATAGGAGATTAACGAATGCCGAATGAAAACATGTCGAAGAACGTGTGCAAAAA
AGACTTGTGAGTTGGAAAGGAAAATTACTATCCTTGGGAGGAAGACTGGTTCTCATAAAT
TCAATACTCACT



Homology of Contig U35_34671 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os07g30190.116363e-66protein|retrotransposon protein, putative, unclassified, expressed
Brachypodium v1_2None
Arabidopsis v10None