- Probe CUST_25715_PI390587928
- Source Contig U35_34678
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_25715_PI390587928 | Hv_44K_v2 | AAGATTGGCCATGTGATTCACATGCTTGAAGTTGATGATTTCCCCTACAGAGATGACCGC | 159 | GeneList: lightcyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.066 | 1.422 | 2.003 | 1.602 | 0.562 | 0.546 |
| Raw | 90.188 | 196.299 | 232.407 | 292.852 | 34.910 | 38.085 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK366800 | 1838 | 2e-24 | 1294 - 1353 | 100 | 60 / 60 | plus | ABC13522 |
| MLOC | MLOC_2950.3 | 1394 | 2e-24 | 333 - 392 | 100 | 60 / 60 | minus | ABC13522 |
| MLOC | MLOC_2950.2 | 1439 | 2e-24 | 458 - 517 | 100 | 60 / 60 | minus | ABC13522 |
| MLOC | MLOC_2950.1 | 1938 | 9e-22 | 962 - 1016 | 100 | 55 / 55 | minus | ABC13522 |
| JLOC1 | JLOC1_1763.1 | 1544 | 8e-25 | 924 - 983 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC13522 | 1082 | 3e-25 | 618 - 677 | 100 | 60 / 60 | plus | ABC13522 |
| Harvest35 | U35_34678 | 263 | 3e-25 | 160 - 219 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_20363 | 1221 | 3e-25 | 757 - 816 | 100 | 60 / 60 | plus |
Contig Sequence (263 bp)
>U35_34678 263 Hv_44K_v2 GGCGAATTGGGCCCTTCAGAAGATGCTCGAGCGGCCGCTAGTCTACCTTCAGAGGGGGTT TTGGATCCCAAGATGACCGAGAAGCCTACTTCAAGGGCACTGCAAAAGGCTTTGCTGGTG GCTCTGCGATGTGTAGACCCTGAAGCTCGCAAGAGGCCAAAGATTGGCCATGTGATTCAC ATGCTTGAAGTTGATGATTTCCCCTACAGAGATGACCGCCGAGCTGGCAGAGCTCCAGGT CAAGCCAAATTTGACGGAAACAC
Homology of Contig U35_34678 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |