barSeed - Barley Seed Development Database

Probe CUST_25714_PI390587928

Source Contig U35_46650

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25714_PI390587928	Hv_44K_v2	CATCTGTAAAATGTAAATGATCAGGTTAGTCTCCAGGCTGCCATATACCCAAACCGGATT	0	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.406	0.504	0.878	1.667	1.419	1.747
Raw	47.814	96.341	142.188	415.451	127.359	172.251

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354767	1406	2e-24	1087 - 1146	100	60 / 60	plus	None
MLOC	MLOC_34843.1	1211	2e-24	706 - 765	100	60 / 60	minus	None
MLOC	MLOC_34844.1	1657	2e-24	706 - 765	100	60 / 60	minus	None
JLOC1	JLOC1_22511.1	1428	8e-25	898 - 957	100	60 / 60	plus
Harvest21	ABC47037	383	3e-25	1 - 60	100	60 / 60	minus
Harvest35	U35_46650	383	3e-25	1 - 60	100	60 / 60	minus
Harvest35	U35_25482	659	3e-25	464 - 523	100	60 / 60	plus

Contig Sequence (383 bp)

>U35_46650 383 Hv_44K_v2
AATCCGGTTTGGGTATATGGCAGCCTGGAGACTAACCTGATCATTTACATTTTACAGATG
GAATGGAATGGGCTCATGAACCATTCTTGTAACTGGATGAGGCAAGGTCTTTATGATGAA
GGCCGCAGCTCGCCTCAGTTGGCCATTGGAACACCCTCCTTATCCTTGATGAAACGACCC
TTCAAGCGCGGCCGCTTGACGGCATTGAGCCGGCGTACCTCGTACCGGATCCGCTTCGAG
AACAGCCGGGCATGTCGCTTCTCCTTATACCGCCGAGTTTTTTTTTTTTTTTTTTGAAAC
ACATTTCACACCTTCTACTAGGTGTTGAGGTTCTTCGCTGGCTGGCCTAACTAAATAAAC
CACAGGTGAGCCACACAAAATTT

Homology of Contig U35_46650 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None