barSeed - Barley Seed Development Database

Probe CUST_2570_PI390587928

Source Contig U35_15110

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2570_PI390587928	Hv_44K_v2	CTTCCGTCGCGATGGATGTTGTGAGACAAGTTTTGGTTTTATAAAATGTTGTTGAAACTT	1755	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366954	2299	2e-24	2232 - 2291	100	60 / 60	plus	ABC02849
MLOC	MLOC_20227.1	947	2e-24	10 - 69	100	60 / 60	minus	ABC02849
JLOC1	JLOC1_14026.1	1215	8e-25	886 - 945	100	60 / 60	plus
Harvest21	ABC02849	1329	3e-25	1253 - 1312	100	60 / 60	plus	ABC02849
Harvest35	U35_15110	1832	3e-25	1756 - 1815	100	60 / 60	plus

Contig Sequence (1832 bp)

>U35_15110 1832 Hv_44K_v2
GCCCGAGGCGCCCAAGAAGCCCAAGAAGCCCAAGGTGAAGAAGCCCAAGGTCACGGTCGC
CGACGCCGCCGCCCTCATCGACGCCGACAGCCTCGCCGCGCACCTCGTCGACATCTCGGC
CTCGTATGAGAACCAGGAGGGCATCCAGCTCATGCGCTTCGCGGACTACTTTGGCCGGGC
GTTTGCAAACGTGAGCGCAGCCCAGTTCCCGTGGGCCAAGATGTTCAAGGAATTGCCCAT
GCCCAAGATGGTTGATGTACCGTTGTCCCATGTTCCTGAGCCAGTTTGCAAGACTGCAAG
TGATTGGATCAGCCAGAGATCTCCTGATGCATTGGGAGAGTTTGTTTTGTGGTGTATAGA
TAGCATCATGTCGGAATTGTCAGGTCCAACTGTTGGACCTGGACCTAAGGGCTCGAAGAA
GGTTGTTCAACAAACTCCAAAAGCCCAGGTTGCAATATTCGTTGTGCTTGCCTTGACTTT
AAGAAGGAAGCCAGATGTATTAATAAGCCTCTCCCCAAAACTAGTGGGGAACAGTAAATA
TCTTGGACAGGAAAAGCTTCCCATCATTGCCTGGGTTATTAATCAGGCATCTCAAGGCGA
CCTAGTCTCGGGAATGTTTTGCTGGTCTCATTCCCTATTTCCCACAGTATGTGCAAAGTC
AAGTGGGAATCCTCAGTCCAGAGACCTCGTTTTGCAATTGCTCGAGAGGTTTTTGTCTAC
CCCCAATGCCTCCAAAGCTCGGGCTATGCTACTGAATGGCGCAGTTAGGAAGGGGGAGCG
CCTGGTTCCTGCTGGAACCTTGGATCTCTTTATGAGATGCACATTTCCTGTGCCTAATGC
ACGTGTCAAGGCTACAGAAAGGTTTGAAGCAGCCTACCCTATAATAAAGGAGCTGGCTCT
TGTTGGTACTCCTGGCTCTAAAGCTGTGAAGCAAGCATCACAGCAGCTTCTGCCTTTGGC
TGTGAAGGCAATGCAAGAAAATAATGCAGAGCTCGCCAAGGAGGCCACTGATGTGTTCGT
CTGGTGCCTGACTCAGAGTCCAGACTCCTACAAGCAGTGGGACAAGCTTCATGCGGAGAA
CATCAAAGCTAGTGTTGCTGTCCTGCGCAAAATCACTGCTGACTGGAAGACGCTCTCTCC
CAAGCTAAACTCTGAAGCTCTTAAAGCAACTCTGAAGAGCCTCAAGGCTAAGAACGAGGC
TGCTCTGGAGGAAGCAGAAGACTCTGAGGAGAAGGCGTCCATCAAGGAAGCAGACAAGTA
CTGCAAGGCCATCATCGGGAGGCTGTCGCGCGGCGCGACCTGCCTCAAGGGCAGCCTGCT
GGTGATTGCGCTGGCGGCCGGGGCCGGCTTCATGCTCTCCCCCAACCTGGACCTCACCGC
CGACCTGGAGAAGCTCCAGGGCATGGCGTCTGAGCTCCAGGGCGTGGCGTCGGAGTACCT
GTCGGAGCTCCAGGGCATGGCGTCGGAGTACCTGTCGTCCTTCTGAACATACCGTTTATA
CTGAGAGTTGGAGAGGGGAGGGGAGGAGGGGAAGAAATAAGAGGGGAGAGGGATAGGTCC
TAGACAGACAAAGAGAGAGAGATATACTAGCTCGTCGCAGTTGTTGTTATTACCTTGCAG
GGAGTTGTTTTTTTTTTCTAAGTTAATTTGTTCGGTAGACTGATATATCGGCGAAGGAGG
ATGATGAGGAGAAGGTCTCTGGCCAAATGGCCCCGAGACCTTTGCTGTGCTGTGGACTAA
TTTTAATTAGCAGTCCTTCCGTCGCGATGGATGTTGTGAGACAAGTTTTGGTTTTATAAA
ATGTTGTTGAAACTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_15110 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g03760.1	587	0.0	protein\|expressed protein
Brachypodium v1_2	Bradi2g02000.1	588	0.0
Arabidopsis v10	AT1G70770.1	610	7e-135	Protein of unknown function DUF2359, transmembrane \| chr1:26688622-26691185 REVERSE LENGTH=610