barSeed - Barley Seed Development Database

Probe CUST_25706_PI390587928

Source Contig U35_46659

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25706_PI390587928	Hv_44K_v2	TCTACGAGTTCAAGACCAAGAACGTGTTCGACGGGATCCACAGGGCGCTCACCAGCAATG	446	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.965	1.204	2.692	1.849	0.836	0.494
Raw	24.621	47.209	92.675	98.975	15.952	10.427

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367356	2331	2e-24	1036 - 1095	100	60 / 60	plus	None
MLOC	MLOC_115.2	1562	2e-24	974 - 1033	100	60 / 60	minus	None
MLOC	MLOC_115.1	1827	2e-24	1239 - 1298	100	60 / 60	minus	None
JLOC1	JLOC1_83.2	1813	8e-25	530 - 589	100	60 / 60	plus
JLOC1	JLOC1_83.1	1802	8e-25	530 - 589	100	60 / 60	plus
Harvest21	ABC47052	540	3e-25	447 - 506	100	60 / 60	plus
Harvest35	U35_46659	540	3e-25	447 - 506	100	60 / 60	plus

Contig Sequence (540 bp)

>U35_46659 540 Hv_44K_v2
GAAGCTGGAGGGCGTCGCGGAGCAGCTGATGCCGCTCACGGAGGCGGCCGTGGCCGGGGT
GCTGCGGGAGGCGAGGGACGTCCCCTCCAAGGCGCTCGCTTTCTTCCGGTGGGCCGGCCG
GCAGAGGGGGTACGAGCACGGGTCCGTCGCCTACAACGCCATGGCGAGGGTGCTCGGCCG
GGAGGACTCGCTGCGTGAGTTCTGGGAGCTGGTGCAGGAGATGAAGGCCGGCGGGGTGCA
CGTCGACATCGACACCTACATGAAGCTGTCCCGGCAGTTCCAGAAGCGCCACATGATGAC
CGAGGCCGTGGAGCTCTACGAGCTCATGATGGACGGCCCCTACAAGCCCGCGCAGCAGGA
CGGGCCGCTGCTCCTCCGGCGCATCGCCATGGGGCCGGAGCCCGACCTCGAGCTGGTCTA
CCGCGTCGTGAGGAAGTTCGAGGCCGTCTACGAGTTCAAGACCAAGAACGTGTTCGACGG
GATCCACAGGGCGCTCACCAGCAATGGCAGGTTCNACGAGGCCGCGGAGATCGTGGAAAG

Homology of Contig U35_46659 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g73950.2	574	2e-98	protein\|PPR repeat containing protein, expressed
Brachypodium v1_2	Bradi2g61970.1	586	6e-98
Arabidopsis v10	AT3G48250.1	621	1e-55	Pentatricopeptide repeat (PPR) superfamily protein \| chr3:17870064-17871929 REVERSE LENGTH=621