barSeed - Barley Seed Development Database

Probe CUST_25696_PI390587928

Source Contig U35_46665

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25696_PI390587928	Hv_44K_v2	CACCATGTCGCAGCACGGAAGGAGAAGCAGCTTGAGACGCTGAGGGCTGCTCTTGGGCTA	488	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.101	1.196	1.319	1.130	0.622	0.653
Raw	3124.580	5214.490	5147.463	6586.100	1362.319	1512.663

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58250.3	696	2e-24	509 - 568	100	60 / 60	plus	None
MLOC	MLOC_58250.2	2567	2e-24	2488 - 2547	100	60 / 60	minus	ABC10547
MLOC	MLOC_58250.1	2913	2e-24	2260 - 2319	100	60 / 60	minus	ABC10547
JLOC1	JLOC1_37823.1	1562	8e-25	1484 - 1543	100	60 / 60	minus
JLOC1	JLOC1_37824.1	3006	8e-25	593 - 652	100	60 / 60	plus
Harvest21	ABC47067	548	3e-25	489 - 548	100	60 / 60	plus
Harvest35	U35_46665	548	3e-25	489 - 548	100	60 / 60	plus

Contig Sequence (548 bp)

>U35_46665 548 Hv_44K_v2
GGATCTCGCGTCCCAACCAAGGCCGGTGGGAAACCTAGGGTTCCGCCGACCCGCCGTCTC
GCCGACCGCTCGCCGGCGCCGGCGCCGGCGCCATGTACAACGGCATCGGGCTGCAGACCG
CGCGCGGGTCCGGCACGAATGGGTACGTGCAGACCAACAAGTTCTTCATCCGCCCCCGGG
GCGGGGGGGCCGCCAAGGCGCCGCTCCACAACTACGACCACGACCCCGGCCGCGACAAGC
CCGGCGGGTTGCGGCCGCCCAACAAGGAGATCCTGGAGCACGACCGGCGGCGGCAGGTGG
AGCTGCGGCTGGTCGAGCTGAGGGACACCCTCGAGGAGCAGGGCTACACCGAGGGCGAGA
TCGAGGAGCGCGTCGAGGAGGCGCGAAAGGAGGCCGCTGCCGCTGCCGTGGCCGCGGAGG
CGGGTGGTCGCGCAGGCGGCGGGGGCCCANCACCCCGTCCTGGCGAAGGGTTCACGGGCA
CACAGAGCCACCATGTCGCAGCACGGAAGGAGAAGCAGCTTGAGACGCTGAGGGCTGCTC
TTGGGCTA

Homology of Contig U35_46665 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None