barSeed - Barley Seed Development Database

Probe CUST_25678_PI390587928

Source Contig U35_46682

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25678_PI390587928	Hv_44K_v2	AACTCCAGTTACTTTTAGTCCCCAAGGTGCTGGTGCTACAACTCCAGTAAATGTTACTCC	548	GeneList: floralwhite MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.423	0.550	1.370	1.731	1.081	0.944
Raw	30.313	56.157	134.441	246.676	57.836	55.318

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369037	1658	2e-24	565 - 624	100	60 / 60	plus	ABC19761
MLOC	MLOC_10759.2	1668	2e-24	827 - 886	100	60 / 60	plus	None
MLOC	MLOC_10759.1	1513	2e-24	685 - 744	100	60 / 60	plus	None
JLOC1	JLOC1_7058.2	2594	8e-25	645 - 704	100	60 / 60	plus
JLOC1	JLOC1_7058.1	3940	8e-25	1991 - 2050	100	60 / 60	plus
Harvest21	ABC47107	626	3e-25	549 - 608	100	60 / 60	plus
Harvest35	U35_46682	626	3e-25	549 - 608	100	60 / 60	plus

Contig Sequence (626 bp)

>U35_46682 626 Hv_44K_v2
GCAGCGCCACCACCTACTCGGAGGAGCATCGCTTCCTGCCGCCCCCCAACTCCCATCTGC
TCCCCATCCCTCGCAGCCACGGCGGCGGCGGTCCCCGACGCAGCCCCCCTCCCCGTGAGG
CGGCAGCTCGATTTCCCCAGCGGCGAAGGCAACACGGATGACGACGACGACTTCTTCTTT
CTCGTCGCAGAGGAGATGGAGCGAAACCTAGACCAGGTCGCGCGCCGCGCCGCGCAGAGC
TTGACGCCGCCGACACTTGCGATGGCACGCCCGACTTTCCGTGTGAAGCAGTGCATTTGC
AGGCGCGGGCCATGTGACGTTGAGTGGAAGGAGGGGGGATGGGCATACGTCTGCTCGGCG
ACGCCGAAGTGCAGTCATTCTTCTTATTGCATGGAATCTGATGTCAGTCCAGGTTCACAG
CCTGCCTTTTTGAGTCATCATGAACCCCACAATCATATGACTAATGGTACAACTCAAGTT
AATGTTAGTCCCCAAGGTGCTGGTGCTACAACTCCAGTAAATATTACCCTCAAACGTGAT
GGCGCTAGAACTCCAGTTACTTTTAGTCCCCAAGGTGCTGGTGCTACAACTCCAGTAAAT
GTTACTCCCCAACGTGATGGCGCTAG

Homology of Contig U35_46682 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None