barSeed - Barley Seed Development Database

Probe CUST_25677_PI390587928

Source Contig U35_46683

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25677_PI390587928	Hv_44K_v2	TAACGCAGCCAAGGAAAGGTCAGAGTCTCAGAGATAAAAAAGAGATTTTTGGGGCTGAGG	329	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.733	0.956	1.413	1.546	0.886	1.163
Raw	31.094	52.927	82.211	127.614	27.750	41.640

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56963.3	2084	2e-24	207 - 266	100	60 / 60	plus	ABC17684
MLOC	MLOC_56963.1	5173	2e-24	2159 - 2218	100	60 / 60	plus	ABC17684
MLOC	MLOC_56963.2	2504	2e-24	429 - 488	100	60 / 60	plus	ABC17684
JLOC1	JLOC1_36868.2	2494	8e-25	221 - 280	100	60 / 60	plus
JLOC1	JLOC1_36868.1	3267	8e-25	994 - 1053	100	60 / 60	plus
Harvest21	ABC47109	597	3e-25	330 - 389	100	60 / 60	plus
Harvest35	U35_46683	597	3e-25	330 - 389	100	60 / 60	plus

Contig Sequence (597 bp)

>U35_46683 597 Hv_44K_v2
GTGCTTTGCCCTGCTTGCTGTGTCTGCTCTGCATACATATAATTTCTCGGCTGGTGCAAT
CCAGACAGCAGCTTTCTCCCACCTCTCCCTCGGACTACACCACAAGCACACAGCCATGCT
CATGCAGGAGGAGAACTAGATAGCTAGCTAGCTAGAGTTAGTCCCTTGTTTACATAGCCA
GCAGCTACCTTCTTTCTTCTTGATCGGCAACAGCAGCAGCAGCAGATAGGTAGAGAAGAG
TTCTTTCTTTCTTCAGTTTTCATACCAAGGCAAGCCGGCCAGCAGGGAGGAAGATCGATC
GGTTGGAGGAAACAAGGGAATCTGCAGAGTAACGCAGCCAAGGAAAGGTCAGAGTCTCAG
AGATAAAAAAGAGATTTTTGGGGCTGAGGCGATGGCGAGCGGGCGGTTCATGGAGGAGAT
GATGAGGGAGCACGAGCAGAGCCTGCTGGAGGCATCGTGCGGCGGGCTGTTCGACCACAT
CGAGGACCTGCTCGACTTCCCCAAGGAGGACTCGCCCGAGGACGTGCTGCTCCTCGACGC
GCCCGTGCCCGACAGCCCCCTCGCCGCGCGCGTNCTCGCCGGAGTCCCCCCGCCGCC

Homology of Contig U35_46683 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None