barSeed - Barley Seed Development Database

Probe CUST_25670_PI390587928

Source Contig U35_46690

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25670_PI390587928	Hv_44K_v2	GGGGGAGTACGACTACGACCTCTTCACCATCGGCGCCGGGAGCGGCGGCGTGCGGGCCTC	215	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_32914.1	2045	2e-24	74 - 133	100	60 / 60	plus	ABC09527
MLOC	MLOC_32914.2	1941	2e-24	66 - 125	100	60 / 60	plus	ABC09527
JLOC1	JLOC1_21395.1	2067	8e-25	83 - 142	100	60 / 60	plus
Harvest21	ABC47132	275	3e-25	216 - 275	100	60 / 60	plus
Harvest35	U35_46690	275	3e-25	216 - 275	100	60 / 60	plus

Contig Sequence (275 bp)

>U35_46690 275 Hv_44K_v2
AGAGAGAGAGCCATGGCGACAACCGCGGCCCTCCCTTTCTCCTGCGCCGCCACCCTCCAG
ACCCTGACCCGCACCCTCTCCCCGCACCGCTCCATCCTCATCCACCGCCACCGCCTCCGC
TCTCTCGCGGCCTCCCCGCGGCTCCCGGACCGCCCCCGCGCCCGCCTATGCCGCCCCGTC
TCGGCGTCCGCCGCGCCCAACGGATCCTCCTCCGCGGGGGAGTACGACTACGACCTCTTC
ACCATCGGCGCCGGGAGCGGCGGCGTGCGGGCCTC

Homology of Contig U35_46690 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None