barSeed - Barley Seed Development Database

Probe CUST_2566_PI390587928

Source Contig U35_14272

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2566_PI390587928	Hv_44K_v2	GCTTTGTGTTGTTTGTGTGATGTCCTGAATCAGCTAGAAGTGATTTTCTTTTTCTTTTGT	431	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358554	1985	2e-24	1816 - 1875	100	60 / 60	plus	ABC01560 ABC01562 ABC36496 ABC50157
MLOC	AK250843.1	2010	2e-24	1899 - 1958	100	60 / 60	plus	ABC01560 ABC01562 ABC36496 ABC50157
MLOC	MLOC_73159.2	2351	2e-24	2126 - 2185	100	60 / 60	plus	ABC01560 ABC01562 ABC36496 ABC50157
JLOC1	JLOC1_48689.1	1937	8e-25	1675 - 1734	100	60 / 60	plus
Harvest21	ABC36817	607	3e-25	47 - 106	100	60 / 60	minus
Harvest21	ABC36496	540	3e-25	430 - 489	100	60 / 60	plus	ABC36496
Harvest21	ABC01565	696	3e-25	37 - 96	100	60 / 60	minus
Harvest21	ABC01558	2091	3e-25	1852 - 1911	100	60 / 60	plus
Harvest35	U35_14272	542	3e-25	432 - 491	100	60 / 60	plus
Harvest35	U35_14268	2118	3e-25	1852 - 1911	100	60 / 60	plus

Contig Sequence (542 bp)

>U35_14272 542 Hv_44K_v2
AGGGTTGCTGTCATCCTTGTTACTGTGCTCTTCAGAACCATTTTCGGTGGCAAGAAGGCA
GTGGTATGTTATATGTTATTTTCCGACATGTGCCATTGCTGTATTTCTTAAAACCTGAGT
CAAACGACTGACCGCAACTTCTGCTTCTTTCAGGCACCTGTGAAGCCCGCTGCTGTGGTG
AAGAAGCCCAGTGCCACGGAAGCCGATGCCGCCGGAAGCAGCGGTGACAAGGAGGACAAG
GAGGATGAGAAGGATGACACGGCTGCACCACGCAGAAGGTCGCGAAGGGAGACGTAGGCC
AGACCTTCACATTTTCGGACGTCTCGGTCCTCGCCTTTTTGTGAACTCCTCGAGTGTATA
ATCGAACAGTCTTGCCGCCGCTTCTGCTGCTACCCCTAGTTTTAAGTCACTAGAATCTAC
GAGCCGGTGAAGCTTTGTGTTGTTTGTGTGATGTCCTGAATCAGCTAGAAGTGATTTTCT
TTTTCTTTTGTATCAAATGAAACTTGAAAGGATCTTTTGATATTTAAAAAAAAAAAAAAA
AA

Homology of Contig U35_14272 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None