barSeed - Barley Seed Development Database

Probe CUST_25659_PI390587928

Source Contig U35_5602

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25659_PI390587928	Hv_44K_v2	GACAGAGTTGTAATGCGCCAATTTTCAGGCTTGTTTTCTAGCCAATTTTTCCACAAAAAA	1205	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.228	1.582	1.242	0.850	0.411	0.444
Raw	762.007	1532.583	1048.864	1107.273	191.077	224.341

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC12298	1276	3e-25	1207 - 1266	100	60 / 60	plus	ABC12298
Harvest35	U35_5602	1275	3e-25	1206 - 1265	100	60 / 60	plus

Contig Sequence (1275 bp)

>U35_5602 1275 Hv_44K_v2
GAACAGTCCAGAGTTATCAGAAAGCAATCTTTACGGCTATATCCACCAATATATCCATTT
GCTCGAAAGTGACGTCCGAGTAGATGTTCTTGAAGCACTAAACGAGAAGATAAGAAAGCG
TTTCAAGACACCTAAATTGTCAAATAGCAACTTTGCGAAGATCTGTAAGCATGCTTCTCT
GTCATGGTGCCGGTGTATACTCATCAAACTGGCCTCAATCACCCCGCTGCCTGAATCTAT
GGACACAGACAATCAGCCTGTTCCATTATCCAATGGCCTTCTACTTTATGTTGATCTGCA
ACCTGATGAGCTCCTTATCTCATCCCCTGATGGGCCTACTCAATTCAAAGGTCTTGACAT
GAATTGGTTTGAGACACTCAATAGAATTAAAAACATTCCGATCAGACAGACATCCGAAGA
TAACATGGAGACTGCTGTTACTGTAATGAAGAGCACTTACAACTTTTACCGGGACAGTTA
TTGTGGAACATTTCCCTCAGGTATTAATCTCTACACAGTAACCCCATCCCAGGCATCTGT
TGAAGGGGTACAGCAAGCCCCTGGCATAGTTGACACCCTTGACCTAAGCATCCCAAGGAA
GCTCCTTCTGTGGGTATATACATTGGTTCACGGTCGATATTGCAACATATCTGCCGTTGT
AAAGTACTGCGATGAGATGAAGGCAAGAAATAAAAGAGGAACCCTAACGGCGGCAGCTTC
GTCACAAGTCACGCCTCCAGCACTGCACAGCTCTGTTTCTTCTCACGTTATCTCCAAAGA
AAAGAGTGCGCATACCGTGCCCACCGAAGCTCAAGAAGCAAATGCCTCTGCTCCAGTAGC
GGCCAGTGTTCCTCTCCACCAAGAAGCAGAGGGCAGCGCCCCGCTGATTGCCGCCGAGGC
ACAGAAACCCAGCACCGCGGCATCTCAACTCTCGCGCAGCGGCTCATCTAGGACAATGGA
AAGTGCTCCGGATGGCGGTCAAGGCAATGCCGGTGCAGCTTGATTGTACATCATGCTTCT
CTACACCCATGTGAGCTCCGCGGATGGTTATGAGATTAGATAGAAGGCTTCTTCTCTTCC
TGCAGAAATATAATGTCCGCAGTTGTAGCAGAAAATAGGTCTGATGCCTTTCCTGGTGTA
TAAACTACCCTTATAGTAGAAGCTAATGTAGCACTAAGGACATATTGGGCGAGTGTTTGG
TTTTAGACAGAGTTGTAATGCGCCAATTTTCAGGCTTGTTTTCTAGCCAATTTTTCCACA
AAAAAAAAAAAAAAA

Homology of Contig U35_5602 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi1g12217.2	482	2e-179
Arabidopsis v10	AT4G32820.2	1872	2e-55	Tetratricopeptide repeat (TPR)-like superfamily protein \| chr4:15831679-15841454 REVERSE LENGTH=1872