- Probe CUST_25652_PI390587928
- Source Contig U35_5610
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_25652_PI390587928 | Hv_44K_v2 | GTCACAGATTTTATGTTAAATTTGTATATCCTGTATGTCCACGTGTTGTGGTTGTACTGT | 396 | GeneList: lightgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.093 | 0.372 | 0.667 | 1.936 | 3.052 | 4.400 |
| Raw | 94.063 | 622.155 | 877.867 | 3756.990 | 2203.943 | 3542.777 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_4233.1 | 507 | 2e-24 | 411 - 470 | 100 | 60 / 60 | plus | ABC12748 |
| MLOC | MLOC_4234.1 | 754 | 2e-24 | 639 - 698 | 100 | 60 / 60 | plus | ABC12748 |
| JLOC1 | JLOC1_2605.1 | 646 | 8e-25 | 449 - 508 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC12748 | 510 | 3e-25 | 397 - 456 | 100 | 60 / 60 | plus | ABC12748 |
| Harvest35 | U35_5610 | 510 | 3e-25 | 397 - 456 | 100 | 60 / 60 | plus |
Contig Sequence (510 bp)
>U35_5610 510 Hv_44K_v2 CGCCTCCCCATCTGCTTGTTCTCATCGCCTCAAAGAAGCTTTGGCGTTGTTACCTCTGAC CGGCGGCAGGATGTGGATGAGGAAGAAGAAGGCGGCGACGACGAGGCCGGCGGCCCGGAG GAGGGCGCCGACGTCGCTTGGGGCGCTGTGGCGGCGCGTGGTCGGGCCGGCGCGCGGAGG CAAGACCAAAAAGACCAAGACCAAGAAGAGCAAGAGCAAGATCGGGTCGCTCTCGCGCGC GTTCAGGGTGTTCTCCTGCGTCCGCGGCCATGGCAAAGGGAGGATGGCTGCGCGCGCAGC CCGCCGGTATTGATCGGCTTGCGACGCGCACGTCCGCCGTCCGGGCGTCGAAAAGAGTCG TAATTAGCTGGCTGCGAGTCTTTGTCGTAGCTGCGCGTCACAGATTTTATGTTAAATTTG TATATCCTGTATGTCCACGTGTTGTGGTTGTACTGTCTGCTGTTTTGTGGAATGAAAATA TATGCGTTTCCGTAAAAAAAAAAAAAAAAA
Homology of Contig U35_5610 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |