- Probe CUST_25627_PI390587928
- Source Contig U35_43541
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_25627_PI390587928 | Hv_44K_v2 | AACGGATGTCCTCGGCTTACAAAACTGAACATCAGTGGATGTTCCAGTTTCAGTGACAGT | 579 | GeneList: lightyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.214 | 0.191 | 0.900 | 2.942 | 1.579 | 1.302 |
| Raw | 2.851 | 4.404 | 29.438 | 153.650 | 28.438 | 26.647 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_62561.1 | 1977 | 2e-24 | 864 - 923 | 100 | 60 / 60 | plus | ABC06590 |
| MLOC | MLOC_62561.2 | 2728 | 2e-24 | 951 - 1010 | 100 | 60 / 60 | minus | ABC06590 |
| JLOC1 | JLOC1_40949.3 | 2975 | 8e-25 | 1740 - 1799 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_40949.2 | 2050 | 8e-25 | 815 - 874 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_40949.1 | 2618 | 8e-25 | 1383 - 1442 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC40335 | 639 | 3e-25 | 580 - 639 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC06591 | 1055 | 3e-25 | 892 - 951 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_43541 | 639 | 3e-25 | 580 - 639 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_17288 | 1952 | 3e-25 | 892 - 951 | 100 | 60 / 60 | plus |
Contig Sequence (639 bp)
>U35_43541 639 Hv_44K_v2 CTCCTCGCCACCCTCAAGCTCAAGGCCTCCGCCTGCCTCGGTCCGGTGCGCGGTGGCCAC GGGCGTCCCTCCCTCTTCGACAACAACCCTACCCTAGCCGCGTCTCCTCTCCGGCTCCGG GTCGAGGTGCTCACGCTGGTACACAGGGAATTGGATGCATGCTTCAGCAACCTCTTGGTG TCTAGCGGTGGCGGAAGGGGGCAGGCTGAAATTGGTGGCGCTATGCCTATGTTGTCAGGA TGGAAGGACCTTCCAATGGAGCTGCTTATGCGGATCGTATCTGTTGCTGGAGATGATCGA ACTGTCGTTGTGGCATCCGGTGTTTGCACTGGCTGGCGCGACGCGTTAGGGTGGGGGGTC ACTAATCTTTCCCTCTCATGGTGCCAGCAGAACATGAATAACTTAACAATATCAGTTGCT CACAAGTTCACAAAGCTTCAGGTTCTCACTCTTCGCCAAATCAAACCTCAGCTTGAAGAC AGTGCAGTAGAGGCTGTTGCCAACTACTGTTATGATCTACGTGAGTTGGACCTCAGCCGA AGTTTCCGGCTTAGTGATCGCTCATTGTACGCATTGGCCAACGGATGTCCTCGGCTTACA AAACTGAACATCAGTGGATGTTCCAGTTTCAGTGACAGT
Homology of Contig U35_43541 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os05g35110.1 | 377 | 4e-69 | protein|OsFBL22 - F-box domain and LRR containing protein, expressed |
| Brachypodium v1_2 | Bradi2g24860.4 | 378 | 8e-79 | |
| Arabidopsis v10 | None |