- Probe CUST_25618_PI390587928
- Source Contig U35_43547
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_25618_PI390587928 | Hv_44K_v2 | ATGCCTACTGATATCGGACTGAGATAACTGGATTCGTTGATACAATGAAAAGTTCGTCAC | 22 | GeneList: tan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.302 | 0.844 | 1.861 | 1.671 | 0.746 | 0.964 |
| Raw | 219.890 | 1006.834 | 1871.027 | 2695.664 | 417.276 | 585.117 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK368356 | 2021 | 2e-24 | 1951 - 2010 | 100 | 60 / 60 | plus | ABC40347 |
| MLOC | MLOC_18158.1 | 1222 | 2e-24 | 254 - 313 | 100 | 60 / 60 | plus | ABC07664 ABC40347 |
| JLOC1 | JLOC1_12557.1 | 1273 | 8e-25 | 252 - 311 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC40347 | 545 | 3e-25 | 23 - 82 | 100 | 60 / 60 | minus | ABC40347 |
| Harvest35 | U35_43547 | 545 | 3e-25 | 23 - 82 | 100 | 60 / 60 | minus |
Contig Sequence (545 bp)
>U35_43547 545 Hv_44K_v2 TTTTTTTTTTTTTTTTTAAAAAGTGACGAACTTTTCATTGTATCAACGAATCCAGTTATC TCAGTCCGATATCAGTAGGCATATGCGCCTGGGGAAAAACACACACACACACACACACAC ACAAATATTTTCCGCGTCGTGGCTGAAACCAACATGGTACTTTGCCGGCCACGACGCCGC GCCATTAGTTGCATTCTTAGTTGCGGTGCCCGCCGGCGGGAGCGGCCCACGCCGGCCGGC ATGGTCATCACGCAAATATACAAGCCAAACAGACATGCATCACCCTCGTTAGCTACTCCT CCGGCCGGTGTTGGCGTCGGCGGCCGCCTCGAGCCTCCGCCACCGCGCGTCGCGCGCGGC GGCCCGGGCGTGGGCCTCGGCCCGGTTCGCGGCGAGGTCGGCGGCGCAACGGTCGTAAAG GTCGGGCGCTACCTGCTGGAGCAGCGCCTTGACGCTGGCCGTGACCTGCTGCACGCACTT GCTCCAGTGCCGCTCCAGGTTGTCCTCCACGCTGGCCACGAACGGCGGCAGGATGCGCTC CATGG
Homology of Contig U35_43547 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |