barSeed - Barley Seed Development Database

Probe CUST_25615_PI390587928

Source Contig U35_29255

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25615_PI390587928	Hv_44K_v2	ATTGGTGGCAAGAAGTTTGCGCTGAAACCAGAAGAGTATATCCTGAAGGTTGGTGAAGGA	383	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17865.1	1285	2e-24	340 - 399	100	60 / 60	minus	ABC02354 ABC02356
JLOC1	JLOC1_12340.1	1976	8e-25	891 - 950	100	60 / 60	plus
Harvest21	ABC02357	799	3e-25	378 - 437	100	60 / 60	minus
Harvest21	ABC02355	1899	3e-25	1384 - 1443	100	60 / 60	plus
Harvest21	ABC02353	1122	3e-25	580 - 639	100	60 / 60	plus
Harvest35	U35_29255	461	3e-25	384 - 443	100	60 / 60	plus
Harvest35	U35_497	852	3e-25	315 - 374	100	60 / 60	plus
Harvest35	U35_280	1912	3e-25	1376 - 1435	100	60 / 60	plus

Contig Sequence (461 bp)

>U35_29255 461 Hv_44K_v2
CGAGGTACCCGGAGGTTGAGGCCGCTGGCGCCACCCTCCTCGTCGCCGCCGCCGCCACCC
ACAAGGCGAGCTCCGGCGGGATGGAGATGACGGCGGAGAACGGCGGCTGCGGCTGCACCC
AGTGCAACTGCGGCACCAGCTGCGGCTGCTCCTGCTGCAGCTGCTAGATCGATCGTCGAT
CATGCATGCACCGTGCATGCATCATCGTATCGTATCGATCTACTACTATCATACCATGTA
ACCGCAACCTGATCGAGGGCCTTTATGTCCAGGATCTCATACTAGATTACGTTAACCAGC
TGTGCAACCGTCTCCCAAGTCCCATGGGAGAATCAGCCGTGGACTGCGGCAGCCTTGGGT
CCATGCCTGACATTGAGTTCACCATTGGTGGCAAGAAGTTTGCGCTGAAACCAGAAGAGT
ATATCCTGAAGGTTGGTGAAGGAGCTGCTGCCCAGTGCATC

Homology of Contig U35_29255 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None