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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_2560_PI390587928Hv_44K_v2GCCATCTAGATAGCCCTTAGCTCTAATAAGTGAAATAAGATTTTCTGTACGTGTCAAACA877GeneList: blue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.5361.4891.2010.7420.2580.338
Raw 148.817221.658159.161162.20818.17927.084



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_20258.18892e-24648 - 70710060 / 60plus ABC04654
JLOC1JLOC1_14049.17298e-25649 - 70810060 / 60plus
Harvest35U35_142789903e-25878 - 93710060 / 60plus



Contig Sequence (990 bp)

>U35_14278 990 Hv_44K_v2
GGGAAGCATTGGTACAACGCAGAGTGGCCATTACGGCCGGGGAAAGCGAATAGTGTGGAA
GCGTCGAGGTCTCTTGCTTGTTTCCCAAGAAGAAGAAGGAGAAGAGCTAGCGGCGTCTGA
TCTCGGCCATGGCGGCGATTAGGCGTCTGATCCCGTCCTTCAACCGGGTGCTGGTGGAGA
AGGTGGTGCAGCCCAAGAAGAGCGCCGGCGGCATCCTCCTCCCCGAGACCTCCAAGCAGC
TGAACTCTGGTAAGGTGGTGGCTGTTGGCCCTGGCAACCGTGACAAGGAAGGGAAGCTGA
TCCCTGTTGCTCTCCAGGAAGGCGACCATGTGCTCCTGCCTGAGTATGGTGGTCTTGAAG
TCAAGCTTGCTCCTGAGAAAGAGTACCTCCTCTACAGAGAGGACGACATTCTGGGCACCC
TGCACGAGTGAATTCGGACAGTCAGGAATTCATCAGCTGCTTTAATCCAGGAGGAGAGGA
TGTTTAGAGTTTCCATGTTATCGGATAAACCTTGAAATAGAACTCTTTTATGGTGTGATG
ATAGAATTTTGCCTCGAACATCATGAACTTGATATGATTGCTGCACGCTTTCAGTCGTGA
TGCCATTCAGTAAACTTGTGGAGCTGAAGTGCTGCCCTTAATTTTCGTCAAAAAAAAAAA
AAAAAATGGCTTCCCTGGCTGCCAAGCCTTCCGTTTTTTGGTTTTTTGGATTTTCAGTGG
ATGCATTGATGGGTCACTGGTGTCCTGTTTTACTTGGTGCGCTATTGAGGTCTAACTTTA
AACAAGCAAGCTAGTCTATGTGTATGTGCAAATCTTAGCGCAGGCTCAGCTTCTGTTTGT
TCGTTTTTTTGGGGCGCATCTGGGTATGGTTGGATGTGCCATCTAGATAGCCCTTAGCTC
TAATAAGTGAAATAAGATTTTCTGTACGTGTCAAACATGAAACTTATTTGGAGCGCATAA
CAGAAAATTCATTGAAAAAAAAAAAAAAAG



Homology of Contig U35_14278 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2Bradi1g19860.11011e-55
Arabidopsis v10None