barSeed - Barley Seed Development Database

Probe CUST_25603_PI390587928

Source Contig U35_17282

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25603_PI390587928	Hv_44K_v2	TCTTTGTTTTCCAGCATGGTCCTTGAAGTTAACTGAATATGTGAGCGCAAAACCAAAAAA	907	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.579	1.513	1.078	0.903	0.364	0.502
Raw	694.140	1021.591	653.951	852.596	123.222	183.723

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_9987.1	1811	2e-21	1672 - 1731	97	58 / 60	plus
Harvest21	ABC42702	515	4e-24	12 - 69	100	58 / 58	minus	ABC42702
Harvest35	U35_17282	978	3e-25	908 - 967	100	60 / 60	plus

Contig Sequence (978 bp)

>U35_17282 978 Hv_44K_v2
CGCGAGCGCCGCCGTCTCTCTCCATCCACTCTCGCTCCCCTCCCCTCCCAGCCTAATCGA
GCCAAGCCAAGCCAAGCCGCAGCCTGAGCTGAGAGGCAGGAATGGGGTGGAAGGCCGCGG
AGAAGCTCATCAGGCACTGGAAGATCCTCCGCGGCGACAACGTGATGATCATAAGGGGCA
AGGACAAGGGGGAGAGCGGGCTGATCAAGCGGGTCATCCGCTCGCAGAATCGCGTCATCG
TCGAGGGAAAGAATCTGGTTAAGAAACATATTAAGCAAGGAGAAGGGCATATAGGCGGGA
TCTTCTCAGTTGAAGCTCCACTTCATGTTTCAAATGTACAAGTAATTGATCCAGTCACCG
GGAAGCCATGCAAGACTACATACAAGTATTTGGAAGATGGGACTAAAGTAAGGGTCTCTA
GGGGAATGTATGCGTCTGGTGCTGTCATACCTCGGCCAGAAATTTTGAAGGAGAGAAAAA
AGCCGAGACCCACATCTCATGGCCCAAAGGATACACCAATTGAGGATGTGCTGGAGAAGA
CCTATGATGCCAAAGCTGGAATTGGTATGCCTGATCTATGAGAGGAGACGTCCACCATTG
CTGAGAGTGAAAGAAAAAGAATTGGGCATATATGTGATCTATCCGTCCTAGCTAAAAGAT
AGTTTATTATGTCAGCTGTTCACGAATAAAACTAGCATCCGTGTTGTCTTTGCCAGCATC
TCATGTGTTTCCAGAAATCTGTCCCTCAAGACCCTAAATGTTTGTCCCTGAACGGTAGAT
TCTACCACGGAAGTCCATGAATGCTGGCAAATAGAATTGTTTGATTGTACGAGAGAAACC
CCCAAAAAGTACTGTGTGAGCCAGGCTGCTAGTTTATCAAGATCAGATATTGAGTTTTAC
TGTAATTTCTTTGTTTTCCAGCATGGTCCTTGAAGTTAACTGAATATGTGAGCGCAAAAC
CAAAAAAAAAAAAAAAAA

Homology of Contig U35_17282 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g04370.1	160	1e-102	protein\|ribosomal protein L24, putative, expressed
Brachypodium v1_2	Bradi4g26480.1	160	3e-106
Arabidopsis v10	AT5G23535.1	159	2e-87	KOW domain-containing protein \| chr5:7935871-7937127 FORWARD LENGTH=159