barSeed - Barley Seed Development Database

Probe CUST_25599_PI390587928

Source Contig U35_31578

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25599_PI390587928	Hv_44K_v2	GAACTTTCCGATCATGCCCCTCTCACAGTTCAACTACACGGGGGTATCGCCGAACAACAC	338	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59803.3	1314	2e-24	988 - 1047	100	60 / 60	plus	None
MLOC	MLOC_59803.1	2053	2e-24	1380 - 1439	100	60 / 60	plus	ABC47164
MLOC	MLOC_59803.2	2026	2e-24	1375 - 1434	100	60 / 60	plus	ABC47164
JLOC1	JLOC1_38941.1	2026	8e-25	1370 - 1429	100	60 / 60	plus
Harvest35	U35_31578	464	3e-25	339 - 398	100	60 / 60	plus

Contig Sequence (464 bp)

>U35_31578 464 Hv_44K_v2
TCGAGCACTGTTGGCCACTGGAGCTTCGACAAGGACCTGCCACTCTTCAGGCCGACTCTC
CCAAGGTTCAACGACACCGGCCTGGTCACCAACTTCACCTCCAAGCTCCGGAGCCTTGCC
ACGCCGCAGTACCCGGCGGCCGTGCCGCAGTCGGTGGACAAGCGATTCTTCTTCACGGTC
GGGCTGGGCACGCGCCCTTGCCCCGTGAACGCGACGTGCCAGGGGCCTACCAACACGACA
CAGTTTGCGGCCGCCATCAACAACATCTCCCTGGTGCTTCCCTCGACGGCGCTCCTACAG
TCGCACTTCACAGGCATGTCTAGAGGTGTCTACGGGTCGAACTTTCCGATCATGCCCCTC
TCACAGTTCAACTACACGGGGGTATCGCCGAACAACACCAACGTGGCCACCGGGACCAAG
CTGCTCGTGCTGCCATTTCACGCGACGGTGGAGCTGGTGATGCA

Homology of Contig U35_31578 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g62480.1	580	1e-70	protein\|laccase precursor protein, putative, expressed
Brachypodium v1_2	Bradi1g24880.1	582	2e-79
Arabidopsis v10	AT5G60020.1	577	4e-54	\| Symbols: LAC17, ATLAC17 \| laccase 17 \| chr5:24168072-24170223 FORWARD LENGTH=577