barSeed - Barley Seed Development Database

Probe CUST_25593_PI390587928

Source Contig U35_17288

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25593_PI390587928	Hv_44K_v2	TATGGGCAGAAACTGGTTGCAGTTTGCGTATTTTTATTGACGAAGATATCGTTAAGCAAA	1878	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.233	0.325	1.101	2.381	1.260	1.108
Raw	17.818	41.860	119.446	406.662	74.236	71.157

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC06590	1017	3e-25	944 - 1003	100	60 / 60	plus	ABC06590
Harvest35	U35_17288	1952	3e-25	1879 - 1938	100	60 / 60	plus

Contig Sequence (1952 bp)

>U35_17288 1952 Hv_44K_v2
CAGAAAGCGCCGGCCTTTCGTGTCCGTCCGTACGGCCAACGCGCGCCCGCCCCCAAACAG
AAACAGAAACAGAAACAGAAGGGAGGGAAGAAAAATCTCCGCCCCAGGCGGCCGGGGCCG
TGTCGGCAAGCCCCAGCCATCGGCGCCGGCCTAATAAAGTCGGCCGGCCGGATATAGCCA
CCCTTCCTTTCCCCGCACGCACGCACGCACGCGCCACGCCAGCTTCGTCAGCATCCTCCT
CGCCCGCCCCTATAGCTTCTTCCTCCTCGCCACCCTCAAGCTCAAGGCCTCCGCCTGCCT
CGGTCCGGTGCGCGGTGGCCACGGGCGTCCCTCCCTCTTCGACAACAACCCTACCCTAGC
CGCGTCTCCTCTCCGGCTCCGGGTCGAGGTGCTCACGCTGGGGGTACATTGATACTTCAA
GTAAAATTGAAAATGGTTAGTGCGAGGTCAGTACACAGGGAATTGGATGCATGCTTCAGC
AACCTCTTGGTGTCTAGCGGTGGCGGAAGGGGGCAGGCTGAAATTGGTGGCGCTATGCCT
ATGTTGTCAGGATGGAAGGACCTTCCAATGGAGCTGCTTATGCGGATCGTATCTGTTGCT
GGAGATGATCGAACTGTCGTTGTGGCATCCGGTGTTTGCACTGGCTGGCGCGACGCGTTA
GGGTGGGGGGTCACTAATCTTTCCCTCTCATGGTGCCAGCAGAACATGAATAACTTAACA
ATATCAGTTGCTCACAAGTTCACAAAGCTTCAGGTTCTCACTCTTCGCCAAATCAAACCT
CAGCTTGAAGACAGTGCAGTAGAGGCTGTTGCCAACTACTGTTATGATCTACGTGAGTTG
GACCTCAGCCGAAGTTTCCGGCTTAGTGATCGCTCATTGTACGCATTGGCCAACGGATGT
CCTCGGCTTACAAAACTGAACATCAGTGGATGTTCCAGTTTCAGTGACAGTGCCTTAATC
TGCCTTAGTTGCCACTGTAAAAACCTGAAGAGCTTGAATCTGTGTGGATGTGGGAAGGCA
GCCACTGATGAATCTTTGCAGGCCATAGCCCAAAACTGTGGGCACCTGCAATCTTTAAAC
CTAGGTTGGTGTGATAATGTCACAGATGAAGGGGTCACCAGCTTGGCATCAGGTTGCCCT
GATCTCAGGGCCCTAGATTTGTGTGGCTGTGTTCTTATAACAGACGAGAGTGTCATTGCT
CTTGCAAGCGGGTGCCTGCACCTGCGATCATTGGGCCTGTACTACTGCCAGAACATCACG
GACCGTGCCATGTACTCCCTCGCAAACAGCTGCGTGAAGAGCAAACGAGGGAGATGGGGC
ACGATGAGGAGCAGCAGCAGCAGCTCGAAGGACGTCGACGGGCTGGCAAACCTCAACATC
AGCCAGTGCACGGCCTTGACGCCTCCCGCGGTTCAGGCGGTCTGCGACTCCTTCCCGTCG
CTCCACACCTGCCCAGACAGGCACTCCCTCATCATCAGCGGCTGCCTCAGCCTGACTAAC
GTCCACTGTGCCTGCGGCCTCCAACGCCACCGTGCCGGAAGCGCCATGCAGGCCACCAGC
CATGCGTACTGAGGATGTGCGTGCGCTCCTGGTTGTGGCGAACGCCGTGTGCCTCTTGCG
GTTGCGGGGAGGTTTGGTCCCGGCGTGGAGGAAGATGTGTATATAAACTCGGAACCTGGA
AATGTAATCTTGTAGTAGTAGGACTATTGTATCATGAGGACTCTGACGCGGCCATGGAGC
GGCAAATGGCTGGAGGGTTGCATGCTCTCCCATGCCATTCTTGAAACTGGCAAGAAGTTG
CATGCTATGTATGTGATGGATTTCAATGAAGGATCTGTCGGTTGATACTGGGGATCAGTG
GTTTGCAGCTTAGGGTAATATGGGCAGAAACTGGTTGCAGTTTGCGTATTTTTATTGACG
AAGATATCGTTAAGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_17288 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g35110.1	377	0.0	protein\|OsFBL22 - F-box domain and LRR containing protein, expressed
Brachypodium v1_2	Bradi2g24860.4	378	0.0
Arabidopsis v10	AT1G21410.1	360	1e-153	\| Symbols: SKP2A \| F-box/RNI-like superfamily protein \| chr1:7497479-7499386 FORWARD LENGTH=360